Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd703_2904 |
Symbol | secD |
ID | 8089737 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya dadantii Ech703 |
Kingdom | Bacteria |
Replicon accession | NC_012880 |
Strand | - |
Start bp | 3386379 |
End bp | 3388193 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644836986 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002988501 |
Protein GI | 242240320 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.392926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGATCG TGACGATTGT CGTTGGTCTG CTCTACGCAC TTCCTAACCT TTATGGTGAG GATCCGGCTG TTCAGGTCAC TGGCGCGCGG GGAACCGCCG CCAGTGAGAG TACGCTGGTC CAGATCCAGA GCGTTTTAAA AGAACAAAAT ATTTCCAGCA AATCCATTGT GCTGGAAAAT GGCGCCATTT TGGCGCGTTT TTCTACTCCT GATATCCAAT TGCGGGCACG CGAAGCGCTG CTCAATGCAT TGGGCGAGAA ATACGTTGTG GCGCTTAACC TTGCGCCGTC AACCCCCCAC TGGCTGAGAA TGCTCGGTGC GGAACCGATG AAGCTGGGCC TCGACCTGCG CGGCGGCGTA CATTTCCTGA TGGAAGTGGA TATGGAAACC GCGTTGAGCA AATTGCAGGA ACAGACCATG GATTCTCTGC GCAGCGATCT GCGTGAGAAA AATGTTCAAT ACGCCTCTAT CCGTAAGTCC GATAACTATG GCGTAGAAAT CGTTTTCCGT GATGGCCAAC AGCGTGATCA GTCGGTTGAT TATCTGACAT CCCGTCATCG TGATCTGGTC ATTACTTCCA GCGGCAGCGA CACGTTGCGT GCGGTGATGA GCGATGCCCG GTTGCGCGAA GCCCGCGAAT ATGCCGTTCA GCAGAACATC AATATCCTGC GTAACCGTGT GAACCAACTG GGCGTGGCCG AACCGCTGGT GCAACGTCAG GGTGCTGACC GCATCGTGGT TGAACTGCCG GGGATTCAGG ATACCGCGCG CGCCAAGGAA ATTCTGGGTG CCACCGCGAC GCTGGAATTC CGTCTGGTGA ACAGCAACGT CGATCCTGCT GCGTTAGCCA GCGGCCGCGT ACCCGGCGAT ACCGAAGTGA AGAACATGCG TGACGGCGGG CCGATAGCGC TGTACAAACG TGTCATTCTG ACCGGCGATC ATATCACCGA CTCCACCTCC GGCAACGATG AGTACAATCG CCCGCAGGTG AATATCTCGC TGGATAGCGC CGGCGGCAAT ATGATGCTCA ACTTCACTAA GGTCAACATC GGCAAGCCGA TGGCAACCCT GTTTGTGGAG TATAAGGACA GCGGTAAGAA AGGCGCCAAC GGCCGTGCCA TTCTGGAGAA ACAGGAAGAG GTGATTAACG TCGCCACAAT CCAGTCTCCC TTGGGCAACA GTTTCCGGAT TACCGGCATC GACAACCCGA ACGAAGCTCG CCAATTGGCG CTGTTGCTGC GTGCCGGTGC ATTGATCGCG CCGATTCAGA TCGTGGAAGA GCGTACCATC GGCCCAACGC TGGGGATGCA GAATATCACC CAAGGGTTGG AGGCCTGTCT GGCCGGCCTT GCCGTGTCTA TCCTGTTCAT GATCTTCTTC TACAAGAAGT TCGGCATGAT CGCGACCTCT GCCCTGCTGT CGAACCTGGT GTTGGTGGTC GGCATTATGT CGCTGTTGCC GGGCGCTACG CTGACCATGC CGGGGATTGC GGGGATTGTG TTAACCCTTG CGGTAGCGGT GGATGCCAAC GTACTGATTA ACGAGCGTAT TAAAGAAGAA CTGAGTAACG GGCGTACTGT TCAGCAGGCA ATTGACGAAG GCTACAAAGG CGCCTTCAGC TCCATCTTCG ATGCGAACGT CACGACGCTG ATCAAGGTCA TTATCCTGTA CGCGATCGGT ACTGGTTCGA TTAAAGGATT TGCGATTACG ACCGGTATCG GCGTGGCGAC ATCCATGTTC ACTGCGATCG TGGGTACCCG TGCCATCGTA AACCTGCTGT ACGGCGGCAA ACGCATCAAA AAGCTGTCTA TCTGA
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Protein sequence | MLIVTIVVGL LYALPNLYGE DPAVQVTGAR GTAASESTLV QIQSVLKEQN ISSKSIVLEN GAILARFSTP DIQLRAREAL LNALGEKYVV ALNLAPSTPH WLRMLGAEPM KLGLDLRGGV HFLMEVDMET ALSKLQEQTM DSLRSDLREK NVQYASIRKS DNYGVEIVFR DGQQRDQSVD YLTSRHRDLV ITSSGSDTLR AVMSDARLRE AREYAVQQNI NILRNRVNQL GVAEPLVQRQ GADRIVVELP GIQDTARAKE ILGATATLEF RLVNSNVDPA ALASGRVPGD TEVKNMRDGG PIALYKRVIL TGDHITDSTS GNDEYNRPQV NISLDSAGGN MMLNFTKVNI GKPMATLFVE YKDSGKKGAN GRAILEKQEE VINVATIQSP LGNSFRITGI DNPNEARQLA LLLRAGALIA PIQIVEERTI GPTLGMQNIT QGLEACLAGL AVSILFMIFF YKKFGMIATS ALLSNLVLVV GIMSLLPGAT LTMPGIAGIV LTLAVAVDAN VLINERIKEE LSNGRTVQQA IDEGYKGAFS SIFDANVTTL IKVIILYAIG TGSIKGFAIT TGIGVATSMF TAIVGTRAIV NLLYGGKRIK KLSI
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