| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_1644 |
|---|
| Symbol | |
|---|
| ID | 8090238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 1938599 |
|---|
| End bp | 1939579 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644835727 |
|---|
| Product | aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein |
|---|
| Protein accession | YP_002987263 |
|---|
| Protein GI | 242239082 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.789892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCAT CGTTCAAGGC CACGCTTTTC GCGCTGCTGG TCATTGGCTT ACCGGGCTTC
ACGTCGGCGG CGCAATCCAC CAATACGCCA ACACCATCCA CCGATGCGCC GGCACAATTG
CGCATCGGAT ACCAGAAAGG TTCGGTCAGC CTGGTACTGG CCAAGACCCA CCAGTTGCTG
GAAAAACAGT TTCCTAACAC CCGCATCAGT TGGATTGAAT TCCCAGCCGG CCCGCAAATG
CTGGAAGCGC TCAACATCGG CAGCATCGAT GTCGGCAGCA CCGGCGATAT TCCGCCATTG
TTTGCACAGG CGGCCGGGGC CGATTTGGTT TACATCGGCG TAGAACCGCC GAAACCTAAA
GCCGAAGTGA TTCTGGTCAA GAGCGAGAGC CCAATCAAAA CCGTCGCCGA CCTGAAAGGC
CGCAAGGTCG CGTTCCAGAA AGGCTCCAGT TCCCATAATC TGCTGCTGCG CAATCTGCAA
AAAGCCGGGC TGACGTTTAG CGACATTCAG CCGGCCTACC TGACGCCGGC CGATGCGCGC
GCCGCCTTCC AGCAGGGTAA TGTCGATGCC TGGACGATCT GGGATCCGTA CTATTCCGCC
GCGCTGCTGC AAGGCGGCGT GCGGGTGCTG GCCGACGGCA CCGACCTGAA TCTGACCGGT
TCGTTTTATC TGGCCTCGCG TCGCTATGCC AAGACGTATG GCCCGTTTTT GCAGCAATTT
CTTCATACCC TGACGCAGGC CGACGCATTA ACCATCAGCC AACGTCAACA GAGCATCACT
CTGCTGGCTA ATGCGATGGG GTTGCCCGAG GCGGTGATCG GCAGCTATTT CGACCATCGC
CCCATTACCC TCATCAGGCC GGTGGATGAA CGCACCTTGC AGGCGCAGCA GCGAACCGCT
GATCTGTTCT ATGACAATCA CCTGATCCCC ACCCGGCTGG ATATCGCCAG CCGTATCTGG
CGCGCCCCGA CAGCGCAATA A
|
|---|
| Protein sequence | MFASFKATLF ALLVIGLPGF TSAAQSTNTP TPSTDAPAQL RIGYQKGSVS LVLAKTHQLL
EKQFPNTRIS WIEFPAGPQM LEALNIGSID VGSTGDIPPL FAQAAGADLV YIGVEPPKPK
AEVILVKSES PIKTVADLKG RKVAFQKGSS SHNLLLRNLQ KAGLTFSDIQ PAYLTPADAR
AAFQQGNVDA WTIWDPYYSA ALLQGGVRVL ADGTDLNLTG SFYLASRRYA KTYGPFLQQF
LHTLTQADAL TISQRQQSIT LLANAMGLPE AVIGSYFDHR PITLIRPVDE RTLQAQQRTA
DLFYDNHLIP TRLDIASRIW RAPTAQ
|
|---|
| |