Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd703_0454 |
Symbol | metH |
ID | 8088696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya dadantii Ech703 |
Kingdom | Bacteria |
Replicon accession | NC_012880 |
Strand | + |
Start bp | 489872 |
End bp | 493558 |
Gene Length | 3687 bp |
Protein Length | 1228 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644834523 |
Product | B12-dependent methionine synthase |
Protein accession | YP_002986087 |
Protein GI | 242237906 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0341811 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAAA ATCGACAGCA GGAATTACAG CAGCAACTGG ATCAGCGCAT CATGATTTTG GACGGCGGCA TGGGCACCAT GATCCAGGGG TATCGGCTAC AGGAAGCGGA CTACCGCGGC GCGCGTTTTG CCGACTGGCA TAGCGACCTG AAAGGCAACA ACGACCTGCT GGTGCTGACG AAACCGGACG TGATCGCCGC CATCCACCAT GATTATCTGG CCGCCGGCGC TGATATTCTG GAAACCAATA CCTTCAATGC GACCCGCATC GCTATGGCCG ACTACGACAT GGAAGCTCTG TCGGCGGAAA TCAATACCGT CGCCGCACGT CTGGCGCGCA CCTGCGCCGA CGAATGGACG GCACGCACGC CGGAGCGCCC GCGTTATGTC GCTGGGGTCT TGGGGCCGAC CAATCGCACC GCCTCCATTT CGCCGGACGT GAACGACCCG GCGTACCGCA ACGTCAGTTT TGACCAACTG GTGGACGCTT ATCGGGAGTC GACCCGGGCG CTGATTGAAG GCGGCGTCGA TCTGATTCTG ATTGAGACCA TTTTCGATAC GTTGAACGCT AAAGCCGCGG TTTATGCGGT GGAGTGCGAG TTTGAAGCGT TGGGCATCAC CTTGCCGGTG ATGATTTCCG GCACCATTAC CGATGCGTCC GGTCGTACAT TATCCGGGCA GACCACGGAA GCGTTCTACA ATTCCCTGCG CCATGCCCGC CCACTCTCGT TTGGTCTTAA CTGTGCCTTG GGGCCGGACG AACTGCGTCA GTACGTGGCT GAACTGGCAC GCATTTCCGA ATGCTATGTC TCGGCGCATC CCAACGCCGG GTTGCCGAAC GCCTTCGGCG AATATGATCT GGACGCACGG GAGATGGCGC AGCAGGTCGG CGAGTGGGCG CAATCAGGAT TCCTGAACAT TATCGGCGGT TGTTGCGGTA CGACGCCCGC GCACATCGCC GCCATGGCGC AAGCGGTGGA CGGCGTGCCG CCGCGCAAGC TGCCGCAGAC ACCGGTCGCC TGTCGGCTGT CCGGTCTGGA GCCGCTCAAC ATCGGTGCCG ACACCCTGTT CGTGAATGTC GGCGAGCGTA CCAACGTGAC CGGTTCGGCT AAATTCAAAC GCCTGATTAA AGAAGAAAAA TACAATGAAG CGCTGGATGT GGCGCGTCAG CAGGTGGAGA ACGGCGCACA GATTATCGAT ATCAACATGG ACGAGGGCAT GCTCGACGCC GAAGCGGCGA TGGTGCGTTT CCTCAATCTG ATCGCCGGTG AGCCGGATAT CGCCCGCGTG CCGATCATGA TCGACTCCTC CAAATGGGAC GTGGTGGAAG CGGGCCTGAA GTGCATTCAA GGCAAAGGTA TCGTCAACTC CATCTCGATG AAGGAAGGGG TGGATATCTT TATCGAACAT GCCAAAAAGG TGCGCCGTTA CGGCGCGGCC GTGGTGGTGA TGGCGTTCGA TGAAGTCGGC CAGGCGGATA CCCGCGAGCG CAAGATCGAC ATCTGTCGTC GTGCCTACCG GATTCTCACC GAAGAAGTCG GCTTTCCGCC GGAAGACATC ATTTTCGACC CCAATATTTT TGCCGTCGCC ACCGGCATTG AAGAACACAA CAACTATGCG GTGGATTTCA TCGGCGCCTG TGACGATATC AAGACCCAAT TGCCGCACGC GCTGATTTCC GGCGGGGTGT CCAACGTGTC GTTCTCGTTC CGCGGCAATG AGCCGGTGCG CGAGGCTATC CACGCCGTCT TCCTCTATTA CGCCATCCGC AACGGTATGG ACATGGGCAT CGTCAATGCC GGCCAACTGG CGATTTACGA CGACCTGCCC GCCGAGCTGC GCGATGCGGT GGAGGACGTT GTCCTCAATC GCCGTACTGA TGGGACGGAA CGCCTGCTGG CGATCGCCGA GAAGTATCGC GGCAGCAAAT CCGACGACGA CAGCAACAAG GGCGAGGCCG AATGGCGCGG CTGGCCGGTC AAAAAACGGC TGGAGTACGC GCTGGTTAAA GGGATTACCG AGTTCATCGA GGCGGATACC GAAGAGGCGC GGGCGCAGGC GGCGCGGCCG ATCGAAGTGA TCGAAGGGCC GTTGATGGAC GGTATGAATG TGGTGGGCGA TCTGTTCGGC GCGGGCAAGA TGTTTCTGCC GCAGGTGGTG AAATCGGCGC GCGTGATGAA GCAGGCGGTA GCCTATCTGG AGCCGTTCAT TCAGGCCAGC AAGGAGGCGG GCAGCAGCGC CGGTAAAATC CTGCTGGCGA CGGTGAAGGG CGATGTGCAC GACATCGGCA AAAACATCGT CGGCGTGGTA CTGCAATGCA ACAACTACGA GATCATCGAT CTGGGCGTCA TGGTGCCGTC GGACAAAATT CTTAAAACAG CACGGGAAGA GAAGGTGGAT ATCATCGGCC TGTCCGGGCT GATTACCCCG TCGCTGGATG AAATGGTCAA CGTGGCGAAG GAGATGGAAC GCCAGGGGTT CACGCTCCCG TTGCTGATTG GCGGAGCGAC CACCTCCAAA GCGCATACCG CGGTGAAGAT CGAACAGAAT TACAGCGGGC CGACGGTGTA CGTGCAGAAC GCTTCCCGTT CGGTGAGCGT GGTGTCGTCG CTGCTATCGG CGACGCAGCA CGACGAGTTC GTGGCGCGTA TTCGCCGCGA GTACGAAACG GTGCGCATCC AGCATGCCCG CAAGAAACCG CGTACACCAC CGGTGTCGCT GGACGCGGCG CGGGAGAACG CACAGTCCTT CGACTGGGAA AGCTACACAC CGCCAGCGGC GCACCGTCTT GGCGTGCATC CGGTATCCGC CGGCATCGAC ACGCTGCGTC ATTACATCGA CTGGACGCCG TTCTTCATGA CCTGGTCGCT GGCGGGCAAA TACCCCAATA TTCTGGAAGA CGAGGTGGTC GGCGAGGAAG CCAAGCGGCT GTTTGCCGAC GCCAACGCCA TGCTGGATCA ACTCTCTGCC GATGGCACGC TCAATCCGCG CGGCGTGGTG GGCCTGTTCC CGGCCAACCG GGTCGGCGAC GATATCGAGA TTTATACCGA TGAGCGCCGC GACACGGTGT CCGCACTGAG CTGCCACCTG CGTCAGCAGA CGGAAAAGAC CGACTTCCCC AATTACTGTC TGGCGGATTT CGTGGCGCCG AAATCCAGCG GCAAGCCGGA TTATATCGGC GCGTTCGCCG TGACCGGCGG GCTGGAGGAG GATGAACTGG CGGCGCAGTG GGAAGCACAG CATGACGATT ACAACAAAAT CATGCTCAAG GCGCTGGCGG ATCGGTTGGC GGAGGCCTTC GCCGAATATC TGCACGAGCG GGTGCGCAAG GTGTACTGGG GCTATGCGCC GAACGAGAAC CTGGGCAACG ACGAACTGAT CCGCGAAAAC TATCAGGGTA TTCGCCCGGC GCCGGGCTAC CCGGCCTGCC CGGATCACAC CGAGAAGGCT ATCCTCTGGC AACTGCTGGA TGTGGATAAC ACCGTCGGCA TGAAACTCAC CGAGTCTTAC GCCATGTGGC CGGGCGCGTC GGTCTCCGGT TGGTACTTCA GCCATCCGGA CAGCAAATAT TTCGCCGTGG CGCAAATTCA GCGCGACCAG GTGGACGACT ATGCCGCCCG CAAGCACATG CCGGTGGCCG ACGTCGAACG CTGGCTGGCG CCGAATTTGG GGTATGATGC GGATTGA
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Protein sequence | MAKNRQQELQ QQLDQRIMIL DGGMGTMIQG YRLQEADYRG ARFADWHSDL KGNNDLLVLT KPDVIAAIHH DYLAAGADIL ETNTFNATRI AMADYDMEAL SAEINTVAAR LARTCADEWT ARTPERPRYV AGVLGPTNRT ASISPDVNDP AYRNVSFDQL VDAYRESTRA LIEGGVDLIL IETIFDTLNA KAAVYAVECE FEALGITLPV MISGTITDAS GRTLSGQTTE AFYNSLRHAR PLSFGLNCAL GPDELRQYVA ELARISECYV SAHPNAGLPN AFGEYDLDAR EMAQQVGEWA QSGFLNIIGG CCGTTPAHIA AMAQAVDGVP PRKLPQTPVA CRLSGLEPLN IGADTLFVNV GERTNVTGSA KFKRLIKEEK YNEALDVARQ QVENGAQIID INMDEGMLDA EAAMVRFLNL IAGEPDIARV PIMIDSSKWD VVEAGLKCIQ GKGIVNSISM KEGVDIFIEH AKKVRRYGAA VVVMAFDEVG QADTRERKID ICRRAYRILT EEVGFPPEDI IFDPNIFAVA TGIEEHNNYA VDFIGACDDI KTQLPHALIS GGVSNVSFSF RGNEPVREAI HAVFLYYAIR NGMDMGIVNA GQLAIYDDLP AELRDAVEDV VLNRRTDGTE RLLAIAEKYR GSKSDDDSNK GEAEWRGWPV KKRLEYALVK GITEFIEADT EEARAQAARP IEVIEGPLMD GMNVVGDLFG AGKMFLPQVV KSARVMKQAV AYLEPFIQAS KEAGSSAGKI LLATVKGDVH DIGKNIVGVV LQCNNYEIID LGVMVPSDKI LKTAREEKVD IIGLSGLITP SLDEMVNVAK EMERQGFTLP LLIGGATTSK AHTAVKIEQN YSGPTVYVQN ASRSVSVVSS LLSATQHDEF VARIRREYET VRIQHARKKP RTPPVSLDAA RENAQSFDWE SYTPPAAHRL GVHPVSAGID TLRHYIDWTP FFMTWSLAGK YPNILEDEVV GEEAKRLFAD ANAMLDQLSA DGTLNPRGVV GLFPANRVGD DIEIYTDERR DTVSALSCHL RQQTEKTDFP NYCLADFVAP KSSGKPDYIG AFAVTGGLEE DELAAQWEAQ HDDYNKIMLK ALADRLAEAF AEYLHERVRK VYWGYAPNEN LGNDELIREN YQGIRPAPGY PACPDHTEKA ILWQLLDVDN TVGMKLTESY AMWPGASVSG WYFSHPDSKY FAVAQIQRDQ VDDYAARKHM PVADVERWLA PNLGYDAD
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