| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_4171 |
|---|
| Symbol | |
|---|
| ID | 8117621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 4712498 |
|---|
| End bp | 4713430 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644854551 |
|---|
| Product | ribokinase |
|---|
| Protein accession | YP_003006446 |
|---|
| Protein GI | 251791725 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | [TIGR02152] ribokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000241058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAATGA AATCAGGCAA GCTGGTAGTC TTGGGAAGTA TCAACGCGGA TCATATTTTG
AATCTGGCGC AGTTTCCCCG TCCGGGCGAA ACGGTGATCG GTAAACAGTA TGGCGTGGCA
TTCGGCGGCA AAGGCGCCAA CCAGGCGGTA GCTGCCGGAC GTAGCGGCGC TGATATCGAG
TTTATCGCTT GTGTCGGGGC GGACGATATC GGCGAGCGTA TTCGCCAGCA ACTGATTAAA
GACCGTATTG ATGTCTCCGC TGTCGAGGCG ATTCCAGGGC AGACTACCGG AGTAGCGCTG
ATTTTCGTTA ACGGTGAAGC TGAAAATATG ATCGCTATTC ATGCGGGAGC CAACGCAGCC
GTCACGCCTG ATTACCTGAA TCGCTATCAA CAGAAAATTG TAGCGGCATC CGCATTGTTG
ATGCAGTTGG AGTCGCCGCT GGAAACAGTG GCTGCGGCCG CTCGTCTGGC TCATGACAGC
GGAACGAAAG TGATCCTGAA TCCGGCGCCG GCTTGCCCGT TACCTGATGA ATTGTTGTCG
CTGGTGGATA TGATCACCCC GAATGAAACA GAAGCGCAGA TTCTGACCGG CGTTACCGTC
GAAACCGAAG AGGATGCGCA ACGTGCCGCA CAGGTGCTGC ATGATAAAGG CATTTCGACG
GTACTGATTA CTCTGGGTAG CCGCGGTGTT TGGTTAAGCG AGCAGGGTAA TGGGCGGCGC
ATTGCCGGTT TCCGTGTCAA AGCGGTTGAT ACCATTGCCG CCGGCGATAC ATTCAACGGC
GCACTGGTGA CGGCTCTTTT AGAGTCTCGC CCAATGGATG CCGCAGTTAA ATTCGCTCAT
GCAGCGGCGG CTATCGCAGT AACTCGCCAT GGCGCTCAGC CTTCCGTTCC CTGGCGTGAA
GAGATTGATG CCTTCCTGAA TGCACAGGAG TAA
|
|---|
| Protein sequence | MVMKSGKLVV LGSINADHIL NLAQFPRPGE TVIGKQYGVA FGGKGANQAV AAGRSGADIE
FIACVGADDI GERIRQQLIK DRIDVSAVEA IPGQTTGVAL IFVNGEAENM IAIHAGANAA
VTPDYLNRYQ QKIVAASALL MQLESPLETV AAAARLAHDS GTKVILNPAP ACPLPDELLS
LVDMITPNET EAQILTGVTV ETEEDAQRAA QVLHDKGIST VLITLGSRGV WLSEQGNGRR
IAGFRVKAVD TIAAGDTFNG ALVTALLESR PMDAAVKFAH AAAAIAVTRH GAQPSVPWRE
EIDAFLNAQE
|
|---|
| |