| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3852 |
|---|
| Symbol | |
|---|
| ID | 8118805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 4351107 |
|---|
| End bp | 4352330 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644854219 |
|---|
| Product | drug resistance transporter, Bcr/CflA subfamily |
|---|
| Protein accession | YP_003006131 |
|---|
| Protein GI | 251791410 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.64308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATA AAACAACGTT AATGTCTGGT GAGGCGCTGA CACCGCATTA TCGCCGCGAT
GTACGCATTT TGATCATTCT CAGCACACTG ATGTCGTTTG CGTCCATCGC CACCGATTTA
TACTTGCCCG CTATGCCGAC CATCAGCCAG CAATTGCGGA TGCCGCATGG TGGTATTGAG
TTAACCCTGT CTGGGTTTCT GGTTGGTTTC AGCGTAGGGC AGTTGTTTTG GGGGCCGATA
GGCGATCGTT TCGGGCGGCG TGTGCCCATC TTCGTTGGCT TGGCGATTTT CGCGCTGGGG
TCGGCGGGGT GTGCGTTATC CACAACGGCA GGAGAACTGA TTGCCTGGCG GGCGATACAA
GCGCTGGGAG CGTGTGCCGG GCCGGTGTTG GCGAGGGCGA TGGTGCGGGA TCTCTATTCA
CGGGAACAGG CCGCACAGAT GTTATCGACC CTGATTATGT TCATGGCAGT GGCGCCGTTG
TGCGGGCCGT TGCTGGGTGG GCAGATTCTG GCGTACGCCA ACTGGCAGGC CATTTTCTGG
GTGATGGCGG CCATGGGAGG CGTGGCGGTG ATCGCCACGG TTGTGTTGCC GGAAACTTTG
CCGGTGGCGG CGCGCTCCAC CGTACCGCTG GCTGAGGTCT TTAAAGCTTA CCTTCCGCTG
CTACGCCATA AACGGATTAT GGGGTACGCC ATTGCCAGCA CATGTTATTA CGGCGGTTTT
TACGTGTTCA TCGCCGGTAC GCCGTTTGTC TACATCGACT ATTATCAGGT GCCATCTCAG
GCTTATGGGC TGCTATTTGG CGTTAATATC ATCGGCGTTA TGCTGGCCAA CTTTTTTAAC
CGGCGGCTGG TATTGTCCTG GGGCAGCGAG CGGTTGTTCC ATCTGGGAAG CCGTCTGGCC
GCGTTGGCGG GGGTGCTCAT GGCGATCAAC GCATGGACAG GCTGGTTCGG GATTGCGGGG
TTGGTCGTGC CTTTTTTACT GTATGCCGCC ATGAATGGCT TTATTGTCGC CAATGCGATT
GCCGGCGCGC TGGCGGACGC GACCGGGCGT GTCGGCGCGT GCTCATCGTT GATTGGTGCG
ATGCAATATG GTTCGGGCAT TATCAGCGCT TCCGTGCTGG GCTGGCTGGC AGACGGCACG
CCCTGGCCGA TGGGCGGGTT GATTGGTGTT TGCGCGTTGG GCATCAGCTT GACGGCAGGG
CTGATGCGCC GCGCGCACCC GTAG
|
|---|
| Protein sequence | MNNKTTLMSG EALTPHYRRD VRILIILSTL MSFASIATDL YLPAMPTISQ QLRMPHGGIE
LTLSGFLVGF SVGQLFWGPI GDRFGRRVPI FVGLAIFALG SAGCALSTTA GELIAWRAIQ
ALGACAGPVL ARAMVRDLYS REQAAQMLST LIMFMAVAPL CGPLLGGQIL AYANWQAIFW
VMAAMGGVAV IATVVLPETL PVAARSTVPL AEVFKAYLPL LRHKRIMGYA IASTCYYGGF
YVFIAGTPFV YIDYYQVPSQ AYGLLFGVNI IGVMLANFFN RRLVLSWGSE RLFHLGSRLA
ALAGVLMAIN AWTGWFGIAG LVVPFLLYAA MNGFIVANAI AGALADATGR VGACSSLIGA
MQYGSGIISA SVLGWLADGT PWPMGGLIGV CALGISLTAG LMRRAHP
|
|---|
| |