Gene Dd1591_3095 details

Gene Information

• Locus tag: Dd1591_3095
• Symbol: secD
• ID: 8117793
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: -
• Start bp: 3527199
• End bp: 3529013
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644853472
• Product: preprotein translocase subunit SecD
• Protein accession: YP_003005396
• Protein GI: 251790675
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.303944
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGATCG CGACGATCGT CGTCGGTCTG CTCTACGCAC TTCCTAACCT GTATGGTGAG 
GATCCGGCAA TTCAGGTCAC TGGCGCGCGA GGAACCGCCG CCAGTGAATC TACGCTGGTC 
CAGATCCAGA ATGTTTTGAA AGAACAAAAT ATCGCCAGCA AGTCTATTGC GCTGGAAAAC 
GGCGCTATTC TCGCGCGCTT CTCTACGCCG GATATACAGC TTCATGCTCG TGAAGTGCTG 
CTGAACGCGC TGGGCGAGAA ATATGTGGTG GCGCTCAATC TGGCTCCCGC TACGCCAACC 
TGGCTGAGAG TGCTGGGGGC GGAGCCGATG AAACTGGGTC TTGACCTGCG TGGCGGTGTT 
CACTTCCTGA TGGAAGTGGA TATGGATACC GCATTAGGCA AGTTACAGGA GCAGACGATG 
GATTCCCTGC GCAGTGAACT GCGCGAGAAA GGCATCCAGT ATGCTTCTGT TCGCAAGTCG 
GATAATTATG GCGTGGAAAT CCTGTTCCGC GACAGTCAGC CGCGTGACAA CGCGGTGAAT 
TACCTGACCC CTCGCCATCG CGATTTGGTG ATCAGCTCTA GCGGCAACGA TACGCTGCGT 
GCGGTGATGA GCGATGTTCG TTTGCGCGAA GCCCGTGAAT ATGCGGTGCA GCAGAACATC 
AATATCCTGC GCAATCGTGT TAACCAGCTC GGCGTCGCCG AACCGCTGGT ACAACGCCAG 
GGTGCCGACC GTATCGTGGT TGAATTGCCG GGGATTCAGG ATACGGCGCG CGCCAAAGAA 
ATCCTGGGCG CGACGGCTAC GCTGGAGTTC CGTCTGGTAA ACAGCAATGT TGATCCTGTC 
GCGATGAGCA ACGGGCGTGT GCCGGGCGAT ACCGAAGTGA TGAATATGCG TGATGGCGGC 
CCGATAGCCC TGTTCAAACG TGTGATTCTG ACCGGCGACC ACATTACCGA CTCGACTTCC 
GGCAATGATG AATACAACCG TCCGCAGGTG AATATCTCGC TGGACAGTGC CGGCGGCAAC 
CTGATGTTAA ACTTCACCAA GGGCAACGTC GGTAAGCCGA TGGCGACCCT GTTTGTGGAG 
TATAAGGACA GCGGTAAAAA AGACGCTAAT GGTCGCGCCA TTCTGGAAAA ACAGGAAGAG 
GTGATTAACG TCGCTACTAT CCAGTCTCCT CTGGGTAACA GCTTCCGCAT TACCGGCATC 
AACAATCCGA ACGAAGCTCG CCAACTGTCG CTGCTGCTGC GTGCCGGTGC GCTGATAGCG 
CCGATTCAGA TTGTGGAAGA GCGTACCATC GGCCCGACGC TGGGGATGCA AAACATTACC 
CAAGGTCTGG AAGCCTGTCT GGCTGGCTTA GCGGTGTCGA TTCTGTTCAT GATCTTCTTC 
TACAAGAAGT TCGGCATGAT TGCGACATCG GCACTGTTGT TGAACCTGGT GCTGGTTGTC 
GGGGTGATGT CGTTGCTGCC GGGGGCTACC CTGACCATGC CGGGGATCGC GGGTATCGTG 
TTAACCCTGG CCGTCGCAGT GGACGCTAAC GTACTGATTA ACGAGCGTAT CAAAGAGGAA 
CTCAGCAACG GACGCTCTGT TCAGCAGGCG ATTGACGAAG GCTATCGCGG CGCATTCAGT 
TCCATCTTCG ATGCCAACGT TACGACGCTG ATTAAGGTCA TTATCCTGTA TGCGGTCGGT 
ACCGGCTCGA TCAAAGGATT TGCGATTACG ACCGGGATTG GCGTGGCGAC ATCCATGTTT 
ACCGCGATCG TTGGGACCCG TGCCATCGTA AACCTGTTGT ACGGCGGCAA ACGCATTAAA 
AAGCTGTCTA TCTGA 

 

Protein sequence

MLIATIVVGL LYALPNLYGE DPAIQVTGAR GTAASESTLV QIQNVLKEQN IASKSIALEN 
GAILARFSTP DIQLHAREVL LNALGEKYVV ALNLAPATPT WLRVLGAEPM KLGLDLRGGV 
HFLMEVDMDT ALGKLQEQTM DSLRSELREK GIQYASVRKS DNYGVEILFR DSQPRDNAVN 
YLTPRHRDLV ISSSGNDTLR AVMSDVRLRE AREYAVQQNI NILRNRVNQL GVAEPLVQRQ 
GADRIVVELP GIQDTARAKE ILGATATLEF RLVNSNVDPV AMSNGRVPGD TEVMNMRDGG 
PIALFKRVIL TGDHITDSTS GNDEYNRPQV NISLDSAGGN LMLNFTKGNV GKPMATLFVE 
YKDSGKKDAN GRAILEKQEE VINVATIQSP LGNSFRITGI NNPNEARQLS LLLRAGALIA 
PIQIVEERTI GPTLGMQNIT QGLEACLAGL AVSILFMIFF YKKFGMIATS ALLLNLVLVV 
GVMSLLPGAT LTMPGIAGIV LTLAVAVDAN VLINERIKEE LSNGRSVQQA IDEGYRGAFS 
SIFDANVTTL IKVIILYAVG TGSIKGFAIT TGIGVATSMF TAIVGTRAIV NLLYGGKRIK 
KLSI