| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2021 |
|---|
| Symbol | |
|---|
| ID | 8119338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 2313744 |
|---|
| End bp | 2314760 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644852408 |
|---|
| Product | type III effector protein |
|---|
| Protein accession | YP_003004346 |
|---|
| Protein GI | 251789625 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATA TCAACATCAC GCTCAGTATT CCCAGCGCTG GTCTGAATGG CGGACTGGGA
GGCGTTGGCG GCGCAGACAA TCTGAATAAC GGTCTGGGCA ATAATGGACT TTCCGGCAAG
AAATCAACCT CGCAGGAAAA CCAGCTACTG GAAGCATTAG CGGTAGTGTT GACCGCACTG
CTGCCCAATC TGCTGAACAA CAAAGGCGGT CAGGGCGGCG ACAATAACCC GTTGGGGCGC
ACTACCGATG CCCTCGGCGG TGGAGGAATG GGCAACACAC CGGGCGCCGG CCAAAGCAAC
GGCGCCGGAA ACGGGTTGGG CGATGGCGCC GGCAACGGTG TGAGTCATGG TCTGAACGGC
GATCTGGGCG ATGGACTCGG CGGTGCCGGC GGCGCTCAGG GCCAGAACGG TCTGACCGAC
ATTCTGACCA AGTTGCTGGA TCTGTTGATA CCGAAAGACG GCGCGCAGGG CGGCCAGGGG
TTGCAAAGCA ACGGGCTGGA CGGTGCAGGC GGCGGCGCGT CCGGTGCACA GGGTGCGGGC
GGCGCCGGTG GGGCTGGCGG GGCGGGAGGA ACCGGCGGGC TTGAGGATCT CAGCAAATCG
CTGTTACAGG ATACCGGCGA AAACAGTCTC GGCAATGGGA TATCCCCAAC GCAGGACGGC
GGCGGCCAGA TTAGCGATAA CCCGTTGCTG AAAATCCTGC TGGCGCTGGT GGCGTTGCTG
ATGGAAAGCC AGAAAGGCCA GTTCGGCCAG CCGCAGGGCG GCTCCGGCGG CGGCAATGGC
TCCGGTGGTG CGGCACCGAT TTCCGGCGGC GCACCCAGTA CAGGCAACGC CGCCGGCACG
CCTTCCGCTG GCGGCGGTGT TGCCCCCGTA CTCAGCGGAG CCGCGCCTGA AATCGGCGGC
GTCGCGCCGG CCGGAACCAG TAATAACGCC AGCGAGCTGA CGGACGGCAA AGGCGGCGCG
CAACCCGGCC TGACACCGGC CGAGCCAGGC GGCGCGCTGG CGACAAACAC CTTTTAA
|
|---|
| Protein sequence | MADINITLSI PSAGLNGGLG GVGGADNLNN GLGNNGLSGK KSTSQENQLL EALAVVLTAL
LPNLLNNKGG QGGDNNPLGR TTDALGGGGM GNTPGAGQSN GAGNGLGDGA GNGVSHGLNG
DLGDGLGGAG GAQGQNGLTD ILTKLLDLLI PKDGAQGGQG LQSNGLDGAG GGASGAQGAG
GAGGAGGAGG TGGLEDLSKS LLQDTGENSL GNGISPTQDG GGQISDNPLL KILLALVALL
MESQKGQFGQ PQGGSGGGNG SGGAAPISGG APSTGNAAGT PSAGGGVAPV LSGAAPEIGG
VAPAGTSNNA SELTDGKGGA QPGLTPAEPG GALATNTF
|
|---|
| |