Gene Dd1591_0783 details

Gene Information

• Locus tag: Dd1591_0783
• Symbol: cpdB
• ID: 8120599
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: -
• Start bp: 897541
• End bp: 899487
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644851169
• Product: bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
• Protein accession: YP_003003141
• Protein GI: 251788420
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
• TIGRFAM ID: [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.156862
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCATA AGCTGGTGAT GAGCGTGCTT GCGATAGCCA TCGCTACCGC GACTCAGGCA 
GCCACCGTCG ATTTACGGGT GCTGGAAACC ACCGATCTTC ACAGCAATAT GATGGACTAT 
GACTACTACA AAGACAGTCC AACGGATAAA TTCGGACTGG TCCGTACCGC CAGCTTGATC 
CAGGCCGCTC GCCAGCAAGC CGTCAACAGC GTGCTGGTCG ATAACGGCGA CATTATTCAG 
GGCAGCCCGC TGGGAGACTA TGTTGCCGCC AAAGGATTAC AACAAGGCGA TGTACACCCG 
GTCTATCTGG CGATGAACAC ACTGGATTAC GCCGTCGGCA ATATCGGCAA CCATGAGTTC 
AACTATGGGC TGGACTACCT GCATAAGGCG CTGGCAGGCG CCCACTTCCC GTATATCAAC 
GCCAACGTGC TGGACGCGAA AACCGGCAAA CCGCTGTTTA CACCTTACCT GATCGAAAAG 
AAAACGGTGA AAGATCGTGA CGGCAAATCC CACGAACTGC GCATTGGTTA TATCGGCTTC 
GTGCCGCCGC AAATCATGGT GTGGGACAAA GCCAACCTGA GCGGCAAAGT CACGGTGGCG 
GATATCACCG AAACCGCCAA AAAATGGGTG CCTGAACTGC GTAAACAGGG GGCGGACGTG 
GTGATTGCCA TCCCGCATTC CGGCCTGTCG GCCGAACCGT ACAAAGCGAT GGCGGAAAAC 
TCGGTCTACT ACTTAAGCCA AATCCCCGGT ATCGACGCCA TTATGTTCGG CCACGCTCAT 
GCCGTGTTCC CGAGCAAGGA TTTCGCCGGC ATCAAAGGCG CCGACATCGC CAAAGGCACG 
CTGAATGGCG TTCCCGCCGT AATGCCCGGT CAGTGGGGTG ACCATCTTGG CGTGGTCGAT 
CTGGTCTTGA ACAATGATAA CGGCCAGTGG AAAGTAACCG AAGGCAAGGC GGAAGCCCGC 
CCCATTTTCG ACAAAGCGCA GAAGAAATCA CTGGCGGCGG AAGACCCGCA GTTAGTCACC 
GTGCTGGCGG ATGCGCATCA GAAAACCCGC GAGTTTGTCG GCCAGCCTAT CGGTCAATCT 
TCTGACAACA TGTACAGCTA CCTGTCGTTG ATTCAGGACG ATCCGACGGT CCAGATCGTC 
AACAATGCGC AGAAAGCCTA CGTCGAGCAT TTTATTCAGG GCGATCCGGA TCTGGCGGAA 
CTTCCTGTAC TCTCCGCAGC AGCGCCGTTC AAGGCGGGTG GCCGTAAGAA CGATCCGGCA 
AGCTATGTGG AAGTCGAAAA AGGCCGGTTA ACCTTCCGTA ACGCCGCCGA CCTTTACCTC 
TACCCTAACA CGCTGGTGGT GGTGAAGGTG AAGGGCGAGC AGGTGCGGGA ATGGCTGGAA 
TGCTCTGCCG GTCAGTTCAA CCAGATTGAT GTGCACAAAC GTGAACCGCA GTCGCTTATC 
AACTGGGATG GCTTTCGCAC CTACAACTTT GACGTTATCG ACGGTGTAAA TTATCAGGTC 
GATGTGACGC AGCCTGCCCG CTACGATGGC GAATGTCAGT TGATCAACAG TCAAGCACAT 
CGCATTAACG ATCTGACGTT TAACGGCAAG CCTATCGATC CGCAAGCCAC ATTCCTGATC 
GCCACCAATA ACTACCGCGC TTACGGCGAG AAGTTCGCCG GCACCGGTGA AAAACAGGTT 
GCGTTCGCTT CGCCGGATGA AAACCGTGCG GTACTGGCCG CCTACATCAG TACCGAAACG 
AAAAAATCCG GCGAGGTAAA ACCGTCGGCG GATAACAACT GGCGTCTGGC GAAAATTGTC 
AGTGATACCC CGTTGGATAT CCGGGTGGAA ACCTCGCCGT CGCCGAAAGC CGCTGCGTTT 
ATTCAGGAAA AATCGCAGTA CCCGCTGACA CTGGTGGGTA ACGATGAGGT AGGCTTCGCC 
GTGTACCGCC TAGATCTGCA AAAATAA 

 

Protein sequence

MKHKLVMSVL AIAIATATQA ATVDLRVLET TDLHSNMMDY DYYKDSPTDK FGLVRTASLI 
QAARQQAVNS VLVDNGDIIQ GSPLGDYVAA KGLQQGDVHP VYLAMNTLDY AVGNIGNHEF 
NYGLDYLHKA LAGAHFPYIN ANVLDAKTGK PLFTPYLIEK KTVKDRDGKS HELRIGYIGF 
VPPQIMVWDK ANLSGKVTVA DITETAKKWV PELRKQGADV VIAIPHSGLS AEPYKAMAEN 
SVYYLSQIPG IDAIMFGHAH AVFPSKDFAG IKGADIAKGT LNGVPAVMPG QWGDHLGVVD 
LVLNNDNGQW KVTEGKAEAR PIFDKAQKKS LAAEDPQLVT VLADAHQKTR EFVGQPIGQS 
SDNMYSYLSL IQDDPTVQIV NNAQKAYVEH FIQGDPDLAE LPVLSAAAPF KAGGRKNDPA 
SYVEVEKGRL TFRNAADLYL YPNTLVVVKV KGEQVREWLE CSAGQFNQID VHKREPQSLI 
NWDGFRTYNF DVIDGVNYQV DVTQPARYDG ECQLINSQAH RINDLTFNGK PIDPQATFLI 
ATNNYRAYGE KFAGTGEKQV AFASPDENRA VLAAYISTET KKSGEVKPSA DNNWRLAKIV 
SDTPLDIRVE TSPSPKAAAF IQEKSQYPLT LVGNDEVGFA VYRLDLQK