| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0713 |
|---|
| Symbol | |
|---|
| ID | 8119436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 827497 |
|---|
| End bp | 828531 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644851101 |
|---|
| Product | TIM-barrel protein, yjbN family |
|---|
| Protein accession | YP_003003073 |
|---|
| Protein GI | 251788352 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0573844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAA AACCCATCAG TGAAAACCCC GTGAAATCAG GCGCTGAGAC CGTATCCGGC
AAGCCTGCCC ACCGTCAGAG ATTCTCCATC GCCCCGATGT TGGATTGGAC CGACCGCCAC
TGCCGCTACT TTCACCGGTT GCTGAGTCAA CACGCGTTGT TGTACACCGA GATGGTGACC
ACCGGCGCGA TTTTGCACGG CAAGGGCGAT TATCTGGCCT ACAGCGACGA AGAGCATCCG
CTGGCATTGC AGCTCGGCGG CAGCGACCCG GCAGCACTGG CGCAGTGCGC GCTACTGGCG
GAACAACGCG GCTATGACGA AATCAACCTC AACGTCGGTT GCCCGTCAGA CCGGGTGCAA
AACGGCCGTT TCGGTGCCTG CCTGATGGCG GAAGCGCAAC TGGTGGCCGA CTGCGTCGCC
GCCATGCGTG AACGTGTCGG CATTCCGGTG ACGGTGAAAA CCCGTATCGG CATCGACGAT
CAGGACAGCT ACGAATTTTT GTGCGATTTC ATCCGCACCG TTTCCGAACA GGGTGGCTGC
GACACCTTTA TCGTACATGC CCGCAAAGCC TGGCTTTCCG GCCTGAGCCC AAAGGAAAAC
CGCGAGATCC CGCCGCTGGA TTATCCGCGT GTCTACCAGC TTAAACGCGA TTTTCCGTCG
CTGACGGTGG CGATTAACGG CGGCATCAAA ACGTTGGCCG ACGCGCAGCA GCATCTGCAA
CACGTGGATG GCGTGATGGT GGGCCGCGAA GCCTACCAAA ATCCCGGTAT GCTGGCGCAA
GTCGACAGCG AACTGTTTGG CGTCGACCGT GCGGTGCCGG ATCAGGTAGC GGTAGTGCAG
GCGATGTACC CGTATATCGA ACGCGAACTC TCCGGCGGCG CGTCGTTAGG CCATATCACG
CGTCATATGC TCGGTCTGTT TCAGGGCATA CCCGGCGCAC GTCAGTGGCG GCGTTATCTG
AGTGAAAATG CCCACAAACC CGGTGCCGAT GCCGCGGTGG TGGAACGCGC ATTGGCGCAG
GTTCATGTAG CCTAA
|
|---|
| Protein sequence | MTQKPISENP VKSGAETVSG KPAHRQRFSI APMLDWTDRH CRYFHRLLSQ HALLYTEMVT
TGAILHGKGD YLAYSDEEHP LALQLGGSDP AALAQCALLA EQRGYDEINL NVGCPSDRVQ
NGRFGACLMA EAQLVADCVA AMRERVGIPV TVKTRIGIDD QDSYEFLCDF IRTVSEQGGC
DTFIVHARKA WLSGLSPKEN REIPPLDYPR VYQLKRDFPS LTVAINGGIK TLADAQQHLQ
HVDGVMVGRE AYQNPGMLAQ VDSELFGVDR AVPDQVAVVQ AMYPYIEREL SGGASLGHIT
RHMLGLFQGI PGARQWRRYL SENAHKPGAD AAVVERALAQ VHVA
|
|---|
| |