| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0696 |
|---|
| Symbol | |
|---|
| ID | 8119739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 801338 |
|---|
| End bp | 802339 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644851084 |
|---|
| Product | CRISPR-associated protein Cas1 |
|---|
| Protein accession | YP_003003056 |
|---|
| Protein GI | 251788335 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03637] CRISPR-associated endonuclease Cas1, YPEST subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.101778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACG TATTCAGCCC GTCGGATTTA AAAACCATTC TGCATTCCAA ACGCGCCAAT
ATTTATTACC TCCAGCATTG CCGTATTTTG GTCAATGGCG GACGGGTGGA ATATGTCACC
GAAGAGGGGA ATCAGTCGTT GTACTGGAAT ATCCCGATTG CCAATACCAG CGTGGTGATG
CTCGGCACCG GCACTTCGGT CACGCAGGCG GCGATGCGGG AATTTGCCCG CGCCGGGGTG
ATGGTCGGGT TTTGTGGTGG TGGCGGTACG CCGCTGTTCG CCGCCAATGA GGCCGAAGTG
GCGGTGTCGT GGCTGTCGCC GCAGAGCGAA TACCGCCCCA CCGGCTATTT GCAGGATTGG
GTCAGCTTCT GGTTTAACGA AGAGCAGCGG CTGGCGGCGG CGGTTGCCTT CCAGCAGGTG
CGCATCGGCC AGATTCGCCA GCACTGGCTG GGCGGGCGGC TGGCGCGCGA GTCGCGTTTT
GCTATCAAAC CCGAGCATGT GGAAGCACTG CTTAACCGCT ATCAGCAGGG GCTGACGGCG
TGTCGCACCA GTAACGACGT ATTGGTGCAG GAAGCGATGA TGACCAAAGC GCTGTACCGG
TTGGCGGCCA ACGCGGTGAG TTACGGTGAT TTTACCCGCG CCAAACGCGG CGGCGGCACC
GACATGGCGA ACCGTTTTCT CGACCACGGC AACTATCTGG CTTACGGTCT GGCGGCGGTG
GCGCTGTGGG TGTTGGGATT GCCGCACGGG CTGGCGGTGC TGCACGGCAA AACCCGCCGT
GGCGGGCTGG TGTTCGATGT GGCGGACCTG ATTAAAGACG CGCTGATTCT GCCGCAGGCG
TTTATCGCCG CGATGGAAGG GGAAGACGAG CAGGAATTTC GCCAGCGCTG CCTGACGTCG
TTTCGTCAGG CCGAGGCGCT GGACGTGATG ATCGACAGCC TGCAACAGGT GGCGCAGCAA
TTAAGCCAGG TGGCGAAAAC CGGGAGTCGG GGGGCGCAAT GA
|
|---|
| Protein sequence | MDNVFSPSDL KTILHSKRAN IYYLQHCRIL VNGGRVEYVT EEGNQSLYWN IPIANTSVVM
LGTGTSVTQA AMREFARAGV MVGFCGGGGT PLFAANEAEV AVSWLSPQSE YRPTGYLQDW
VSFWFNEEQR LAAAVAFQQV RIGQIRQHWL GGRLARESRF AIKPEHVEAL LNRYQQGLTA
CRTSNDVLVQ EAMMTKALYR LAANAVSYGD FTRAKRGGGT DMANRFLDHG NYLAYGLAAV
ALWVLGLPHG LAVLHGKTRR GGLVFDVADL IKDALILPQA FIAAMEGEDE QEFRQRCLTS
FRQAEALDVM IDSLQQVAQQ LSQVAKTGSR GAQ
|
|---|
| |