| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0564 |
|---|
| Symbol | pdxA |
|---|
| ID | 8119847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 642403 |
|---|
| End bp | 643404 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644850953 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_003002925 |
|---|
| Protein GI | 251788204 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.312917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACTG AAATGCAGGT GCGGCGAGTG GTGATCACCC CCGGCGAACC CGCCGGGATT
GGTCCTGATT TAGTGGTGGA GCTGGCTCAG CAAGACTGGC CGGTGGAGCT GGTGGTGTGT
GCTGACGCAG AGCTGCTGTT GAGCCGCGCG CTGGCGCTGA AACTGCCGCT GACATTGCGT
GAATTTCAGC CACAGCAGGC GGCGCAGCCA CAAATCGCAG GAACGTTAAC GCTGCTGCCT
GTTTCCACCG ACACCACCGT GGTGCCGGGG CAACTGAACG TGGCGAACAG CCGCTATGTG
CTGGATACGC TAACCCGTGC TTGCGACGGT TGTCTGAATG GCGACTTCGC CGCGTTGATT
ACCGGCCCGG TGCACAAGGG CATGATCAAT GAATCGGGTA TTGCGTTTTC CGGTCACACC
GAGTTTTTCG CCGAGCGCAG CCAGTGCGCG CGCGTAGTGA TGATGCTGGC GACCGAAGAA
CTGCGCGTCG CGCTGGCGAC GACCCATCTG CCGCTAAAAG CGGTATCGGA TGCCGTCACC
CGCGATAGCC TGCACGAAGT CATCACCATT CTGCATCAGG ATTTGCAGCG CAAGTTCGGC
CTCGCCCAAC CGGTCATCTA CGTCTGTGGG CTGAACCCGC ACGCCGGCGA AGGCGGCCAC
ATGGGACGTG AAGAACTGGA TGTCATTATT CCGGCGCTGG ATGAACTGCG TCAGTCCGGC
ATCCAGTTAG TCGGCCCGTT GCCGGCTGAT ACCTTGTTCC AACCCAAGTA TCTCGAACAC
GCCGACGCCG TACTGGCGAT GTATCACGAT CAGGGCCTGC CCGTGCTGAA ATATCAAGGC
TTCGGCCGGG CCGTCAATAT TACGCTGGGG CTGCCGTTTA TCCGCACGTC CGTCGACCAT
GGCACCGCGC TGGAACTTGC CGGTAGCGGC CAGGCCGATC CGGGCAGCTT CCGCACCGCA
TTAAACCTCG CTCTACATAT GATTGCTAAC CGTAATGAAT AA
|
|---|
| Protein sequence | MPTEMQVRRV VITPGEPAGI GPDLVVELAQ QDWPVELVVC ADAELLLSRA LALKLPLTLR
EFQPQQAAQP QIAGTLTLLP VSTDTTVVPG QLNVANSRYV LDTLTRACDG CLNGDFAALI
TGPVHKGMIN ESGIAFSGHT EFFAERSQCA RVVMMLATEE LRVALATTHL PLKAVSDAVT
RDSLHEVITI LHQDLQRKFG LAQPVIYVCG LNPHAGEGGH MGREELDVII PALDELRQSG
IQLVGPLPAD TLFQPKYLEH ADAVLAMYHD QGLPVLKYQG FGRAVNITLG LPFIRTSVDH
GTALELAGSG QADPGSFRTA LNLALHMIAN RNE
|
|---|
| |