| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2780 |
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| Symbol | |
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| ID | 8378464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | - |
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| Start bp | 3156418 |
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| End bp | 3160620 |
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| Gene Length | 4203 bp |
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| Protein Length | 1400 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645002005 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_003159272 |
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| Protein GI | 256830544 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.363065 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCTTG ATGATCTTTT TACACAACGG GGCAGTGCAT CCAGCTCTTT CAATAGCCAG
AATCTCAAAG CGATCGGAAT CAACGTCGCT TCTCCGGAGA AGATTCGCGA ATGGTCTTTC
GGTGAAGTAA AAAAACCCGA AACGATTAAC TATCGCACAT TCAAGCCGGA ACGGGACGGC
CTTTTCTGCG CCAAGATTTT TGGCCCGGTC AAGGATTACG AGTGCAACTG CGGAAAATAC
AAGCGCATGA AGCATCGCGG CATTGTCTGC GAAAAGTGCG GTGTTGAAGT AATCGCATCC
AAGGTCAGAC GCGAGAGAAT GGGGCATATT GAACTTGCCG CCCCCGTTGC TCATATCTGG
TTCCTGAAAT CCTTGCCCTC CAAGATCGGT ACCTTGCTCG ATATGACCAT GGCCGATCTG
GAAAAGGTGC TTTACTTTGA TTCATATATC ATACTGGATC CAGGCGAGAC GACCTTGCTC
AAGAAGCAGG TCATTTCAGA GGAACAGTAT TTTCAAATTC TTGATCACTA TGACGACAAC
GCCATAACGG TGGGCATGGG CGCCGAATCT ATCAAGATCC TGTTGCAGGA GATTGATTTG
GCGAGTCTGC GGGTGGAACT GCGCGAAGAG TCCCAATCCA CCCGTTCCCA GACCAAGAAA
AAGAAGTTGG CCAAGCGCCT GAAAATCGTC GAGGCTTTCC TGGAATCCGG GAACAAGCCC
GAGTGGATGG TCATGGACGT GATCCCGATC ATCCCGCCCG AGCTGCGTCC CCTGGTTCCT
CTCGACGGCG GCCGGTTCGC CACGTCCGAC CTGAACGACC TCTATCGCCG GGTCATCAAT
CGCAACAATC GTTTGAAGCG GCTCTTGGAG CTTGGCGCTC CGGACATCAT CATCCGCAAT
GAAAAGCGCA TGTTGCAGGA GTCCGTGGAC GCCCTCTTCG ACAACGGCCG GCGTGGTCGT
GCCATAACCG GCACCAACGG CCGTCCGCTC AAATCCTTGT ACGACATGAT CAAGGGCAAG
CAGGGCCGCT TCCGTCAGAA CCTTCTCGGC AAGCGTGTCG ACTATTCCGG CCGTTCCGTA
ATCGTGGTCG GTCCGTATCT GAAATTGCAT CAGTGCGGCC TGCCCAAGAA GATGGCGCTC
GAACTGTTCA AGCCCTTCAT CTATTCCAAG CTTGAGGAGC GGGGTTATGC CAGCACCATC
AAGAGCGCGA AGAAGATGGT CGAGCGTGAA GAAATCGCTG TTTGGGATAT TCTCGAAGAA
GTTGTGCGCG AGTACCCCAT CCTGCTGAAC CGCGCGCCGA CGCTGCATCG TCTGGGCATC
CAGGCTTTTG AACCCATTTT GGTCGAAGGA AAGGCGATAC GGCTGCATCC CCTGGTATGT
ACTGCTTTCA ACGCCGACTT TGACGGTGAC CAGATGGCCG TGCACGTGCC TCTTTCGGTG
GAGGCTCAGA TTGAATGCCG CGTGCTCATG ATGTCCACGA ACAACATTCT GTCCCCGGCT
AACGGCTCTC CGATCATCGT GCCTTCGCAG GATATTGTTC TTGGCCTGTA CTTCCTGACC
GTGGAGCGTC CTTTCGAGCG CGGCGAAGGC ATGATCTTTT CCGACCCCGA TGAGGTCATT
TGCGCCTTTG ACTCGGGTCA CGTGGAACTC CACGCGCGGA TCAAGGTCCG CATCGACGGG
GAACTAGTCG CCACCACTCC CGGCAGGATC ATCATCCGCG AGATCGTGCC GACGGAAGTT
CCTTTCGAGG TCTATAACCG CGAGATGAGC AAGAAGGTTA TCGGACGTCT GGTGGGCGAA
GCCTACCGCT TGGCCGGTAC CAAGGCCACG GTCATTCTGT GCGACAAGCT GAAGGATTTG
GGATTCGAGT ACTCGACGCA GGCCGGGATC ACCGTCGGCG TGAAGGATCT GACCATCCCG
CCGGCCAAGT CCGGCATTCT GGATCGCTCC CACACCGAGG TTTCGGATAT CGAGCAGCAG
TACCGCGAAG GTATCATCAC CCGTACGGAA AAATATAACA AGGTCGTTGA CGTCTGGACC
AAGGCAACCA ATGACGTGGC CGACGCCATG ATGCTGGAGC TGAAGTACGA CACCGTGCCC
AACCCAAAGC AGGATGATTC CCCGCACGTG AAGCATGCGC TTCGCTGGGA AGTTTCCAAG
CTCAAGGAAG AGCGCTGCAA CAGCTTTAAC TCGGTCTTCA TGATGGCCAA CTCCGGTGCG
CGAGGCAACC AGGATCAGAT GCGCCAGTTG GCAGGCATGC GTGGTCTGAT GGCCAAGCCT
TCCGGTGAAA TCATCGAGAC GCCCATCACC TCTTCATTCC GTGAAGGGTT GACCATTCTG
CAGTACTTCA CGTCCACACA CGGTGCTCGT AAAGGTCTGG CCGATACCGC GCTTAAAACC
GCGAACTCGG GCTACCTGAC ACGCCGCCTG GTCGACGTTG TGCAGGACGT CATTGTCAGC
GAGCATGATT GCAAGACGGT AGACGGCATC GAGCTGACCC ACGTCACCAA GAGCGGTGAA
ATCACCGTGC GTCTGAGTGA GCGCGTTCTT GGCCGAACAG CCATGTACGA TATCCTTGAT
CCGGAAACCG GCGAGGTTTT CATCCCCGCC AATGCCATGA TCAACGAGGA ACTTGTCGCC
CAGATCGAGC GACGCAACAT CTCGACCATC ACCATTCGCT CCGCGCTGAC CTGCAAGGCC
AAGCACGGCG TATGCGCCCT GTGTTATGGT CGCGACCTGG CGCGAGGCCA TCTGGTCAAC
GTCGGTGAGG CTGTGGGCAT TATCGCCGCC CAGTCCATCG GCGAGCCTGG AACGCAGCTG
ACCATGAGAA CGTTCCACAT CGGTGGCACC GCTTCCAAGG AAATCGAGCA GAGCAGGTAT
GAGGCTCTAA ACAAGGGCCG GATCGTGCTT TCCCGCGTGC GCACGGTTAC CAATAACCGT
GGAGAGCGTA TGGTTCTCGG CAAGAGCGGC CAGCTGCGCA TCGTCGATGA CCAAGGCGTG
GAACGCGAGA AATACGCGTT GCCTTCCGGA GCCAAGCTGT ATTTTGAAAA CGGCGCCGAG
GTCAAAAAAG GTGATCGTCT TGCGGAATGG GATCCCTTCA ACGAGCCCTT CGTCACGGAT
GTCGAGGGCG TGGTCCATTT CACGGACATC ATTGAAGGCC GCACCGCCCA GGAGCGCATA
GACGAGGCCA CGGGCAAGTC GACTCTGACG GTTATTGAAT TCAGATCTTC GAGCTTCCGT
CCCGGAATCT CCATTTGTGA CGAGAACGGC GTCTGCAAGA CGAAGCCGGA CACAGGGACC
CAGACGTCCT ATGCCCTGCC GGTCGGCGCC ATCGTCATGG TCAACGACGG TGACGTGGTC
CAGCCGGGCG ACATTATCGC ACGTAAGCCT CGCGAAACCA TGAAGACCAA GGACATCGTC
GGCGGTTTGC CGCGTGTTGC CGAACTCTTC GAAGTGCGCA AGCCCAAGGA CCAGGCGATT
CTGTCCGAAA TCGACGGCAT CGTGAGCTTT GGTCCCGATT CAAAAGGCAA GCGCAAACTG
ATTGTGGAGC CTGAAGTCGG AGATGCCCGC GTCTACCTGA TTCCCAAAGG AAAGCATATC
AGCGTCGGCG AGGGTGACTT CGTGGAGAGC GGCGAGCTCC TGACCGAGGG CACGCCGGAT
CTTCATGACC TGCTCAAGGT CAAGGGTGAA AAATTCCTGG CCTTCTACCT GGTCGAGGGT
GTGCAGGACG TGTACCGTTT CCAGGGTGTT TACATCAATG ACAAGCACAT CGAGATCATC
GTCCGCCAGA TGCTCAAGAA GTTGCTGGTC ATCGATCCGG GTGAGACCGG ACTGCTTATG
GGCGAACAGG TCGACAAGGC CAAGTTCGCC AAGATCAATG CCAAGTGCGT AGGCACGGGC
ATGCAGCCTG CTGTTGCAGA ACCGCTGGTG CTCGGAATTA CGCAGGCTTC CTTGTCCACG
GAATCGTTCA TCTCCGCGGC GTCCTTCCAG GAGACGACGA AGGTGCTGAC CGAAGCCGCG
CTGATCGGTA AAAAAGATTA TCTCTACGGA CTCAAGGAAA ATGTTATTGT CGGCAGATTG
GTTAATGCCG GAACGGGTTT CAGATCGTAT ATTGAAAATG ACATTGTGGT CCCGGATCAG
CCGGAAAGCC CTGATAAGTT CCTGGAAGAT CTGGAGAAAG ATCCGTTTTT CATGGGACAA
TAA
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| Protein sequence | MSLDDLFTQR GSASSSFNSQ NLKAIGINVA SPEKIREWSF GEVKKPETIN YRTFKPERDG
LFCAKIFGPV KDYECNCGKY KRMKHRGIVC EKCGVEVIAS KVRRERMGHI ELAAPVAHIW
FLKSLPSKIG TLLDMTMADL EKVLYFDSYI ILDPGETTLL KKQVISEEQY FQILDHYDDN
AITVGMGAES IKILLQEIDL ASLRVELREE SQSTRSQTKK KKLAKRLKIV EAFLESGNKP
EWMVMDVIPI IPPELRPLVP LDGGRFATSD LNDLYRRVIN RNNRLKRLLE LGAPDIIIRN
EKRMLQESVD ALFDNGRRGR AITGTNGRPL KSLYDMIKGK QGRFRQNLLG KRVDYSGRSV
IVVGPYLKLH QCGLPKKMAL ELFKPFIYSK LEERGYASTI KSAKKMVERE EIAVWDILEE
VVREYPILLN RAPTLHRLGI QAFEPILVEG KAIRLHPLVC TAFNADFDGD QMAVHVPLSV
EAQIECRVLM MSTNNILSPA NGSPIIVPSQ DIVLGLYFLT VERPFERGEG MIFSDPDEVI
CAFDSGHVEL HARIKVRIDG ELVATTPGRI IIREIVPTEV PFEVYNREMS KKVIGRLVGE
AYRLAGTKAT VILCDKLKDL GFEYSTQAGI TVGVKDLTIP PAKSGILDRS HTEVSDIEQQ
YREGIITRTE KYNKVVDVWT KATNDVADAM MLELKYDTVP NPKQDDSPHV KHALRWEVSK
LKEERCNSFN SVFMMANSGA RGNQDQMRQL AGMRGLMAKP SGEIIETPIT SSFREGLTIL
QYFTSTHGAR KGLADTALKT ANSGYLTRRL VDVVQDVIVS EHDCKTVDGI ELTHVTKSGE
ITVRLSERVL GRTAMYDILD PETGEVFIPA NAMINEELVA QIERRNISTI TIRSALTCKA
KHGVCALCYG RDLARGHLVN VGEAVGIIAA QSIGEPGTQL TMRTFHIGGT ASKEIEQSRY
EALNKGRIVL SRVRTVTNNR GERMVLGKSG QLRIVDDQGV EREKYALPSG AKLYFENGAE
VKKGDRLAEW DPFNEPFVTD VEGVVHFTDI IEGRTAQERI DEATGKSTLT VIEFRSSSFR
PGISICDENG VCKTKPDTGT QTSYALPVGA IVMVNDGDVV QPGDIIARKP RETMKTKDIV
GGLPRVAELF EVRKPKDQAI LSEIDGIVSF GPDSKGKRKL IVEPEVGDAR VYLIPKGKHI
SVGEGDFVES GELLTEGTPD LHDLLKVKGE KFLAFYLVEG VQDVYRFQGV YINDKHIEII
VRQMLKKLLV IDPGETGLLM GEQVDKAKFA KINAKCVGTG MQPAVAEPLV LGITQASLST
ESFISAASFQ ETTKVLTEAA LIGKKDYLYG LKENVIVGRL VNAGTGFRSY IENDIVVPDQ
PESPDKFLED LEKDPFFMGQ
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