| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2629 |
|---|
| Symbol | |
|---|
| ID | 8378313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 2999047 |
|---|
| End bp | 3002139 |
|---|
| Gene Length | 3093 bp |
|---|
| Protein Length | 1030 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645001855 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_003159122 |
|---|
| Protein GI | 256830394 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGAC CCATGGCAAA AAAACTTTTC ACATCCCTGC GCTCCCGGGC GATTGTCACG
CTTACTGCGA TTTTCATGGC CATGGGCGTC GGTTGCGTAC TCATAGTCGG GCTGATCATC
ATCGACCGCC TCGACACCTT CGAGCGCGAC CTGGCCGCCG CCAATATACG TCGTGCGCGG
AACTCGCTGC AGCAAGACAT GCAACGTGTC GACAACCTGC TCAAAGACTG GGCGTGGTGG
GACGACACCT ATCAATTCAT GTCTACAGCC TCGGAGGAGT ATGCGGAAAG CAACATCACT
CCGGACGTGT TCCTCAACCA GGGCCTCAGC GTCATCGTTT TCGTGACAAA GGAAGGGGAG
ATCCTGCATG CCTCGCAGAT GTCCCGCGAC GGAGATGCGC TCCAAGCCCC CAGCAAGGCC
CTGCTCAGCT ATGTCAAAAG AATCAGCCTC TCCTCGCCCC CCGAAGATCT TTTCAGCGGC
GCCCCCGCGC TGGTGAACGT CGACGGCTCA TTATGGATCG CCGCAAACCG CGCGGTGCTG
ACATCCCAGC AGACCGGGCC GGCGCGCGGC CGGCTGTGGA TGATCCAGAA AATCGACGCT
GCCTACGTTG AAAAGCTGAC CCTGCGCACG GAACTCGCGC TGCAAATCCA CGTCACCGAA
GACGGAACGC TGCCGCAAGC CATGCGCGTG CTGGAAACCG ATCCTCCGGC GTCAGGCGAA
GCCCTCGTTG TTCCCGAGCG CGCCCTCATC TGGAGCGCCC TGCTTCTTTC CGACGCTGCA
GGCGGCCCGC CCGTAGCCAT CATCGCCAAT GCCCCCAGGG AACTGACCAT CCTGGCCCGC
TCGACAATGA AAACCAGCCT CGCGGTGCTC ATTGTGTTCG GAGCGATCGG CTTCTTCAGC
GGCTTCGCCT TTCTCGAAAA AAACATCCTG TCCCGTCTGT CGCTGCTGAG CTCGCGCGTC
AAAAACGATG CTCCGGACGC GCAATTTTGC AGGCTGGATC AAAAATGCGA CGAAATAGAC
CAGCTCTCGA ATCTGGTGGA CACAGCATTC GAGTCCATCC GTGAGAACGA GCGCTTTCTC
AAGGAAATCC TGGGCGCGAT CAAGGTCGGC GTCATGCTCA TCCGCAAGGA AGACAAGGTC
ATCGTCAGCG CCAACCCATA TGCGAGCGCC CTGGCCGGTC GGTCCGAAAA GGACATTGTG
GGCAAGGTCT GCCATCAGTT CACCTGCGGC GCTGAAATCG GGAAATGCCC GGTCTGTGAT
TTCGGGCAGA ACCTCGACAA TTACAAATGC GAGTTTCTCG GCGGTGACGG TGAACGGATC
GATATCCTCA AATCCGTGAC CATCATCACC CGAAACGATC AGGAATATCT GCTTGAAACA
TTCTGGGACA TCCGTGAGAT CGAACGCACG CGGCGCCTCC TGGAGGAATC CGAGGAGCGT
TATCGCGCGA TTTTCTTAAA CACCGGCACG CCAGGAATCC TCATCAACGA GGATACGTCC
ATCGACGTCG CCAACACGGA ATTTCTCCAC CTGGCCGGGG TCACACAGGA CGACATGCGC
CAGAGCCCCT CCTGGACGCG CTTTTTCCAT ACGGATGACG TGCAAAGGAT GCTTCGTTAC
CACGCGCAAA GACGCCAGGA CGAAGCCATT GCGCCCAGAA CCTACGAAGC GCGGCTGATG
GACTCCTCGG GAGAGCTGCA TCATGTCAAG CTCACCGTGG CCATGATCCC GCGCACCCAG
CAATCCATTG CGTTCCTGCT CGACATCACC GACATCAAGA ACGCCGAATG GAAGCTGCAT
GAACTCGCCT ACACGGATGC TCTGACCGGC CTGCCCAACC GCCTCAGCGC CATGGAGAGG
CTGGACCGCA CGGTGCAGGC CCTGTCCCCT GAAACCGGAA GCCTCGCCGT CTTCCTGCTC
GACCTCGACG ACTTCAAGGT CATCAACGAC TCCTGGGGAC ATGCCGTGGG CGACGTCGTA
CTCATGGAGG CGGGGCAGCG GCTTGTTTCC ATCCTCAAGA CATCCGAGCT GGTGGGCCGC
CTCGGCGGCG ACGAGTTCAT CATCGTATCC GATGCCAACA ACTCCAAGGA CGAGTACGCC
CAGCTGGCCC AAAAACTCAT CGACGTCCTT TCCGCGCCAT TCCAGTTCGG AGATTCTGAA
ACATATCTCA GCGTGAGCGT CGGCGTAGCC ATCTTCCCCG AAGACGGGAA CACGGCCGGA
CAACTGATCC GGTGCGCGGA TCTGGCCATG TATCAGGCCA AATCCCTCGG CAAGAACATC
TACCGGTTCC ATTCTCCGGA GCTGACTTTA AAAGCCCAGC GCCGGATGGA AATCGAGAGG
GAGTTGCGCC TGGCCCTGGA CTCCGGAGAA ATTGTCGCCT TCTTCCAGCC GGTCATCGAC
CTCGAAACCC AGAAAATTGT TGGGGCCGAA GCCCTGGCGC GTTGGTGCAA ACGGGACGGC
ACCCTTATCT CTCCAGTGGA TTTCATACCC GTGGCAGAGC AGACAAGCCT CATCACCGAC
ATCGACTTCA GCGTCCTGTC GCAGGCCTGC CACCAGGCCC GGGGCTGGGA TGAAGCCGGA
TTGGGGCGGC TGCGCATCTC CTGCAATATC TCCGCGCGGC ATTTCCAACG CGGAAACCTG
CCCGGGGAAG TGAAGCGCGT CCTTGAGGCC AGCAAGCTGC CCCCAAGTCA GCTGACCCTT
GAAGTCACCG AAACGGTATA CATGGAAAAC ATCGAGCAGG TGCGCAGCAT ACTCGAGTCC
ATAGACGCCA TGGGCGTTTC GAGCGCCCTC GACGACTTTG GGACCGGCTA CTCATCCTTG
TCGTACGTGC GGTCCCTTTC CTTCGATGTT TTGAAGATCG ACAAGTCCTT CGTGAAAAAC
CTGCCGGAAG AGTCCTCGCT CGCACTCATT CGCGCCATGC TCGGCATCGC CATCAGCCTG
GAGATAATCC CCTTGGCCGA AGGCATAGAA ACCCGGGAAC AATTCCTGCT GCTCAAATCA
CTGGGCTGCA AGCTTGGACA GGGCTACCTG TTTTCACCTC CGGTGCCCGC CGCGCAGTTT
CAAGAACTGC TCAAAAAACA GAACACAACA TGA
|
|---|
| Protein sequence | MKRPMAKKLF TSLRSRAIVT LTAIFMAMGV GCVLIVGLII IDRLDTFERD LAAANIRRAR
NSLQQDMQRV DNLLKDWAWW DDTYQFMSTA SEEYAESNIT PDVFLNQGLS VIVFVTKEGE
ILHASQMSRD GDALQAPSKA LLSYVKRISL SSPPEDLFSG APALVNVDGS LWIAANRAVL
TSQQTGPARG RLWMIQKIDA AYVEKLTLRT ELALQIHVTE DGTLPQAMRV LETDPPASGE
ALVVPERALI WSALLLSDAA GGPPVAIIAN APRELTILAR STMKTSLAVL IVFGAIGFFS
GFAFLEKNIL SRLSLLSSRV KNDAPDAQFC RLDQKCDEID QLSNLVDTAF ESIRENERFL
KEILGAIKVG VMLIRKEDKV IVSANPYASA LAGRSEKDIV GKVCHQFTCG AEIGKCPVCD
FGQNLDNYKC EFLGGDGERI DILKSVTIIT RNDQEYLLET FWDIREIERT RRLLEESEER
YRAIFLNTGT PGILINEDTS IDVANTEFLH LAGVTQDDMR QSPSWTRFFH TDDVQRMLRY
HAQRRQDEAI APRTYEARLM DSSGELHHVK LTVAMIPRTQ QSIAFLLDIT DIKNAEWKLH
ELAYTDALTG LPNRLSAMER LDRTVQALSP ETGSLAVFLL DLDDFKVIND SWGHAVGDVV
LMEAGQRLVS ILKTSELVGR LGGDEFIIVS DANNSKDEYA QLAQKLIDVL SAPFQFGDSE
TYLSVSVGVA IFPEDGNTAG QLIRCADLAM YQAKSLGKNI YRFHSPELTL KAQRRMEIER
ELRLALDSGE IVAFFQPVID LETQKIVGAE ALARWCKRDG TLISPVDFIP VAEQTSLITD
IDFSVLSQAC HQARGWDEAG LGRLRISCNI SARHFQRGNL PGEVKRVLEA SKLPPSQLTL
EVTETVYMEN IEQVRSILES IDAMGVSSAL DDFGTGYSSL SYVRSLSFDV LKIDKSFVKN
LPEESSLALI RAMLGIAISL EIIPLAEGIE TREQFLLLKS LGCKLGQGYL FSPPVPAAQF
QELLKKQNTT
|
|---|
| |