Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dbac_1338 |
Symbol | |
ID | 8377003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfomicrobium baculatum DSM 4028 |
Kingdom | Bacteria |
Replicon accession | NC_013173 |
Strand | + |
Start bp | 1479723 |
End bp | 1481093 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645000566 |
Product | type I secretion outer membrane protein, TolC family |
Protein accession | YP_003157852 |
Protein GI | 256829124 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0728783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGGCTGA TTATTTCCTT TTTGAATGGT ATTTCTATGG TTCGCTGCAT TAAAATTTTC CTCACGTTAC TTGCTTTCCT TTCTTTTTCA ACGCCTGCTG TCGCGACAGG TCTGCTGGAT ATGTACAAGC AGGCCGTTCA GAATGATCCT ATATTTCAAA GCTATCAATT TCGGACCTTT GTCGCCCAGG AAGGGAAACG GCAGGCTTTG GCCGCCATGC TGCCGACGGT GATGGCTACG GGCAGCTATA TGCACAAGAG TCAGGACATC GTCAGCAGCG ACAACGAGGT CTACGCCTCG GGCAGTTCCG AGTACGGGAC CACCGTCTAT GGCGTAAACC TGACTCAGCC TTTGTTCAAC TGGGCCTCTT ACACCGGGTG GAAGCAGGCC GAGATCGTTC GCGTCCGCTC GGAGATGGAG TTCGTTCTGG CCGGGCAGGA GCTGATCACC CGGGTCTCGG ACCTTTATTT CCAGGCACTG GCCGCAAAGG ACAGGCTCGA CTACGCCCTC GTCGAGCAGG CCGCCGTCGA GAAACACTTC GAACTGGCCC AGGGCCGTTC GGACATGGGC CTCATTCCCA TCACCGACCT GTACGACGCC AAGGCGCGCC TCGCGGCCAC CGAGGCCCTG ACCATCGAGG CGCACAACAG GCTTGATGAC GCCCTGCAAG CCTTGAGCGA AGTGACCGGC GCACCCGTGG ATGACCTCAT TCCTCTGGCA CCAAACATCA AGCTGAAGAG GCCTGAGCCG CCGACCCTGG ATTCCTGGCT CGCTGGAGCC CTCGAAGGGA ACCCGGCCAT CGAGCTCAGC AAAAAGGCCG TGGAAGTGGC CGAACTCGAA GTGAAGCGCC AGAACGCCGC CCATTATCCT ACGCTGGACC TGGTCAGTTC CTTCGACAAC GAGAACACCG AGGATTCGCT TTTCGGTGGA AGCAGCGAGG TCGACACGTA CAAGATCGGC GTGCAGTTCA ACCTGCCCCT GTATCAGGGC GGTGAAGTCG CTTCCAAGAC CCGCTCTGCG CGGCACGAGG TCGGCATCGC CCGGCAGGAT CTGGTCAAGC AGTCCCGGTC GGTTGCGCGC AAGACCCGCT CGGCCTTTCT CGGCGTCGAC AGTTCACTGA AGAGGGTGGA CGCGCTCGCG CAGTCCCTCG ACGCCAACAA ATTGGCTCTC GAAGCCAAGC AGGACGGCTA CATGTCCGGA TTGTTCACCA GCCTTGGCGT CCTTGACGCC GAACGCGACC TGGCACTGGT CAGCATCGAC CATGCCCAGG CACGCTATGA TTACATTCTC AATAGCCTGC GGCTCAAGCA GGCTGTTGGA TCCCTGACCG AACAGGACTT GCTGGATCTG GAAAACTGGC TTGTGAAATA G
|
Protein sequence | MRLIISFLNG ISMVRCIKIF LTLLAFLSFS TPAVATGLLD MYKQAVQNDP IFQSYQFRTF VAQEGKRQAL AAMLPTVMAT GSYMHKSQDI VSSDNEVYAS GSSEYGTTVY GVNLTQPLFN WASYTGWKQA EIVRVRSEME FVLAGQELIT RVSDLYFQAL AAKDRLDYAL VEQAAVEKHF ELAQGRSDMG LIPITDLYDA KARLAATEAL TIEAHNRLDD ALQALSEVTG APVDDLIPLA PNIKLKRPEP PTLDSWLAGA LEGNPAIELS KKAVEVAELE VKRQNAAHYP TLDLVSSFDN ENTEDSLFGG SSEVDTYKIG VQFNLPLYQG GEVASKTRSA RHEVGIARQD LVKQSRSVAR KTRSAFLGVD SSLKRVDALA QSLDANKLAL EAKQDGYMSG LFTSLGVLDA ERDLALVSID HAQARYDYIL NSLRLKQAVG SLTEQDLLDL ENWLVK
|
| |