Gene Dbac_1248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1248 
Symbol 
ID8376913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp1377469 
End bp1377996 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content41% 
IMG OID645000481 
ProductLytic transglycosylase catalytic 
Protein accessionYP_003157767 
Protein GI256829039 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00404625 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA TCATCATCAC TGCTTCGTTG ATTTTTTCCA TCATTCCCTG TGCGGCGAAT 
GCTGATTTTC TGGGAGCCTT CGACTCCCTT GTCGAGATGT TTCGTGTGAA TACGTTCTCT
GAAAAAAAAT ATAAGCCACA AAGAAATAAT AAAAACGTAT ATTGGAATAT AATTGTCGAT
GCATCTAGGC ACTATGACGT CGACCCTTAT ATCATTCATT GTGTGATCAA ACACGAGTCG
TATTTTGATA AGAATGCGGT TTCTCATAAG GGTGCTATCG GACTCATGCA GCTCATGCCT
GGTACGGCGA AGTCACTTGG GGTTGTAGAC CCGTATAATC CTGTTCAAAA TATCTATGGC
GGAACACTGT ATCTCAGAAA GATGCTGTAC ATGTTCGATA ATGACTTGCG TTATGCACTT
ATGGCATACA ACGCCGGCCC TGGACGGGTG AAAAGAAACT CCATTCCAAA AGTTTCTTAT
GCTTATGCAG ACAGAATTAT TCGCGATTAC AACGCTATGA GGCGATAA
 
Protein sequence
MKKIIITASL IFSIIPCAAN ADFLGAFDSL VEMFRVNTFS EKKYKPQRNN KNVYWNIIVD 
ASRHYDVDPY IIHCVIKHES YFDKNAVSHK GAIGLMQLMP GTAKSLGVVD PYNPVQNIYG
GTLYLRKMLY MFDNDLRYAL MAYNAGPGRV KRNSIPKVSY AYADRIIRDY NAMRR