| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1035 |
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| Symbol | |
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| ID | 8376696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | - |
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| Start bp | 1119042 |
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| End bp | 1122830 |
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| Gene Length | 3789 bp |
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| Protein Length | 1262 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645000275 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003157564 |
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| Protein GI | 256828836 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0004] Ammonia permease |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00836] ammonium transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAATG TTGACATGTT GTGGATAATC ATCTCTGCCT CCCTGGTATT TCTGATGCAA
CCCGGATTCA TGTGCCTTGA ATCAGGAATG ACCCGATCGA AAAACTCCAT CAACGTGGCC
ATCAAGAATT TTGCCGATTT TGTACTTTCG GCGGGCGTGT TCTGGCTGCT GGGTTTCGGA
CTCATGTTCG GGGATATTTC GTGGGAGTAT TTTCGTGCCA CGGGTTTTGC CCCCACGTTG
GAGGACGCGA CAGGCTTCAA GGCGGCGTTC TTCTTTTTCC AGGTCATGTT CTGCGGCACG
GCCACGACGA TTTTTTCCGG CGCCGTGGCC GAGCGCATGC GCTTCTCCTC CTACCTCATC
GTCGCCCTCG TCTTTTCCCT TTTTGTCTAT CCGCTTTTCG GACACTGGGC ATGGCATGGA
ATGGACGCAG GCCAATTGAC GGGCTGGCTC GGAGAGATGG GCTTCGTGGA TTTCGCGGGT
TCCATGGTCG TGCATGGCGT TGGCGGCTGG CTGTCCTTGG CGGCGCTACT CGTGGTCGGG
CCGCGCCAGG GCAGATTTCC GGCGGACGGC CCGCCGCGCG AGATTAACGC CGGCAACCTG
CCCCTGACCG TTCTCGGAGC ATTCCTGCTC TGGCTGGGCT GGTTCGGCTT CAATGGCGGC
TCCACCCTCG CGCTCAACCA GACCGTGCCG CACATCATCG TGCGCACCGT GCTGGCCGGG
ATCGCCGGAG GCGCAAGCAA CATGCTGCTG GGCTGGATGG CCACCCGGAC GCCCAAAATC
ACGTATCTCG TCAACGGCGT CCTGGGCGGC CTCGTGGCCG TGACCGCGAG CTGCCATGCC
GTGAGCAATT TCGACGCCGT GTGCATCGGC CTGGTGGCAG GCGCGGTTTG TCTCGGTTGT
GAATTGCTGC TGGTGCGCCT GCGGATCGAC GACGCCGTCG GCGCCGTACC CGTGCATCTG
GGGTGCGGGA TCTGGGGCAT CCTCGCCGTG GCTCTCTTCG GCGACCCGGC CGTACTGCAA
ACCGGGCTGA GCATGACTGG ACAGCTCTGG GTGCAATGCC TGGGCATTTT CGCCGCCTTT
GGCGTAGCCT TCGTGGTGCC CTTTGTCGTG CTCAGATTCA TTGACCCCTT GTTCCCCCTG
CGCGTGGCTC CCGAGGACGA GGATACAGGG CTGAACGTGA GCGAGCACGG TGCGCACACC
GACATCCACG ACCTCTTCGA AATTCTCGAC AGGCAGGCCG CCACCAGGGA TTTCAGCCTG
CGCGCCCCCG AGGAACCCTT CACGGAAGTC GGGCATATCG CCCACCGCTA CAACCACGTG
CTGGACGCCC TGCACGACGC CGTCTCCAAG ACCGAAGCCA TCGTCAAAAG CGCCGCCGAC
GCAATCATTG TCTTCACCAC GGACACGCTG CGCATCATCT CCGCCAACCC CGGCGCGAGC
TTCATCTTCG GGCATCCCGC CCTGCGTCTG GAAGGGATGA CCATCCCCGA GCTGCTGCCC
GCCTGGGGAA TTCCCGGTTC AGGCGACAAC GAAGCCTCTT TGCTGCACGC CATGCGCTCA
AGCAATCAGG TGGAGGTCAC GGGGCGCAGG GCCAATGGCT CTCAGGTGAC ACTTGAGGCG
GTGATCACGC AGTCGAGCGG GCGCCAGGGA GACTTTTTCA TCGGCACCTT CCGCGACATC
TCCGAACGCA AGCGCTACGA GAACGAGCTG CGCAAGGCCG AAGAGAACTT CCGGGGCATC
TTTGAAAACG CCGTCGAGGG AATGTTCCGG ACCACCCCCC ATGGGCGCTA CCTGCAGGCC
AACCCGGCGC TGGCGAAAAT CTACGGATTT GAAAGCCCGG CCGAACTCAT GCGCCACTAC
GACGACATCA GTCGCCAGCT CTATGTCGAA GCTGGCCGCA GGGAGGAGTT CATCAGGCTG
CTGGGGGAAA AGGAGGAGAT TTTTGACTTC GAATCGGCCA TACGCCGCAA GGACGGCTCC
GTTATCTGGA TTTCGGAGAA TGCGCGGGCA GTGAAGGACG CGGCGGGGAA TGTCGTCTGC
TACGAGGGCA CGGTCATGGA CATCACCCAA CGCCGCGCCA TGCAGCAGGC CCTGGACCGG
CAGATGGCCC TCTTCGGGCA GCTGTTCGAG GATTCCCCCC TGGCCATCGC CCTGGTGGAC
ACCGTGGGCC GCATCGCCCA AGTCAACGGC GGCTTCGAGA CCCTTTTCGG CTACAAGCGC
GCCGAGATTC TGGGCAAGGA CAACAGGCTC TTCATCGTGC CCGAGGAACA GCTGTCCGAG
ATCAACAGCA TCCGCCAGCG CATCCTCGAC GGCGAGACGG TGCAGCGGGA GACGCTCCGG
CGGACCAGTC GGGGCGACAT CGTCCCGGTC AACCTTCTGG GTCATCCGGT GCGCATCGGC
GGCGAGATCA CCAACATCTT CTGGATCTAC CAGGACATCT CCGAACGCAA GGAATTCGAG
CGGCAGATCA CCCATCAGGC CTTCCACGAT TCCCTGACAG GCCTGCCGAA CCGCTCCCTC
TTCCGGGAAC GCCTCGGACG GGCCGTGGAA AGAACAAAAA GGCGGCCCGA CTATCACTTC
GCCGCCATGC TCATCGATCT GAACAAGTTC AAATGGGTCA ACGATTCCCT CGGACATCAG
GCCGGCGACG CCCTGCTGGT GGAAATCGCC TCGCGCCTGA AGTCGTGCGT GCGCAGCGTG
GACACCGTGG CCAGACTGGG CGGAGACGAG TTCGCGATCC TGCTCGAAGA ATTCCGGACC
AACAAGGAGG TCATCTCTGT GGCCAGCCGC ATCCAGAACG AGGTGCGCCG CGCCTTTCTC
TGGAACGGTA AGGAGATCGT CTCCGGGGCC AGCGTGGGCA TCGTGCTGCA AACGCGCGAC
TGCGCAGGGG CCGAGGACAT CCTGCGGGAC GCCGATATCG CCATGTACAA GGCCAAGGAG
CGCGGACGCG GACATCTCGT TTTCCACAAC CGTATGCGCC AGGAGGTGCT GGAGGTCATC
AACATGGAGA ACGAGCTGCG CAGGGCTATC GAAGGAAATA GCCTCGAACT CCACTATCAG
CCGATTTTCG ATGTCGACGG CGGCAAACTC GAAGGGTTCG AGGCGCTGGT GCGCTGGCGG
CACCCGGAGC ACGGCATGAT CATGCCCGAC CGCTTCATTC CCCTGGCCGA GGAATCCGGG
CTGATCGTGC CCCTGGGACA GTGGGTGGTC AACGCGGCCT GCAGGCAGCT CAAAAGCTGG
GACGACGAGA GCGGGACCGC CGAATACGGC CTGACCATGA GCGTCAACCT CTCCTGCAAG
CAGTTCGCCC AGCACACCCT GGTCGACATG ATCTTAAGAG CGCTGCGCGA GAACGACATC
GCCCCGCCGC GCCTGAAGCT GGAAATCACC GAGAGCGCCA TCATCCTCGA CCCCGCCGCC
GCAGCGGAAA AGCTGCGCCG CTTGAAGGAG ATCGGCGTGC TCTTGGCGGT GGACGATTTC
GGCACCGGCT ACTCTTCCTT GAGCTACCTG CGCCAGTTTC CCATGGACAT CCTCAAGATC
GACCGTTCCT TCATCAGCGG CACGGACACG CCCAAGGAGA ACGCCGAGAT CGTCCGCTCC
ATCGTGGACA TGGCCCACAG CCTGGGCCTC AGAGTCACCG CCGAAGGCGT GGAGACGCAG
GAGCAGCTTG AGCGCCTGCA ATCCATCAAC TGCGACCGCG CCCAAGGCTA CATGTTCTCA
AAACCCATGG CTCCGGGGGA TGCCGGGGAC ATGATTCGCC AAGCAGTTTC CGAGGGCGTC
CCGAACTGA
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| Protein sequence | MNNVDMLWII ISASLVFLMQ PGFMCLESGM TRSKNSINVA IKNFADFVLS AGVFWLLGFG
LMFGDISWEY FRATGFAPTL EDATGFKAAF FFFQVMFCGT ATTIFSGAVA ERMRFSSYLI
VALVFSLFVY PLFGHWAWHG MDAGQLTGWL GEMGFVDFAG SMVVHGVGGW LSLAALLVVG
PRQGRFPADG PPREINAGNL PLTVLGAFLL WLGWFGFNGG STLALNQTVP HIIVRTVLAG
IAGGASNMLL GWMATRTPKI TYLVNGVLGG LVAVTASCHA VSNFDAVCIG LVAGAVCLGC
ELLLVRLRID DAVGAVPVHL GCGIWGILAV ALFGDPAVLQ TGLSMTGQLW VQCLGIFAAF
GVAFVVPFVV LRFIDPLFPL RVAPEDEDTG LNVSEHGAHT DIHDLFEILD RQAATRDFSL
RAPEEPFTEV GHIAHRYNHV LDALHDAVSK TEAIVKSAAD AIIVFTTDTL RIISANPGAS
FIFGHPALRL EGMTIPELLP AWGIPGSGDN EASLLHAMRS SNQVEVTGRR ANGSQVTLEA
VITQSSGRQG DFFIGTFRDI SERKRYENEL RKAEENFRGI FENAVEGMFR TTPHGRYLQA
NPALAKIYGF ESPAELMRHY DDISRQLYVE AGRREEFIRL LGEKEEIFDF ESAIRRKDGS
VIWISENARA VKDAAGNVVC YEGTVMDITQ RRAMQQALDR QMALFGQLFE DSPLAIALVD
TVGRIAQVNG GFETLFGYKR AEILGKDNRL FIVPEEQLSE INSIRQRILD GETVQRETLR
RTSRGDIVPV NLLGHPVRIG GEITNIFWIY QDISERKEFE RQITHQAFHD SLTGLPNRSL
FRERLGRAVE RTKRRPDYHF AAMLIDLNKF KWVNDSLGHQ AGDALLVEIA SRLKSCVRSV
DTVARLGGDE FAILLEEFRT NKEVISVASR IQNEVRRAFL WNGKEIVSGA SVGIVLQTRD
CAGAEDILRD ADIAMYKAKE RGRGHLVFHN RMRQEVLEVI NMENELRRAI EGNSLELHYQ
PIFDVDGGKL EGFEALVRWR HPEHGMIMPD RFIPLAEESG LIVPLGQWVV NAACRQLKSW
DDESGTAEYG LTMSVNLSCK QFAQHTLVDM ILRALRENDI APPRLKLEIT ESAIILDPAA
AAEKLRRLKE IGVLLAVDDF GTGYSSLSYL RQFPMDILKI DRSFISGTDT PKENAEIVRS
IVDMAHSLGL RVTAEGVETQ EQLERLQSIN CDRAQGYMFS KPMAPGDAGD MIRQAVSEGV
PN
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