Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dbac_0943 |
Symbol | |
ID | 8376601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfomicrobium baculatum DSM 4028 |
Kingdom | Bacteria |
Replicon accession | NC_013173 |
Strand | + |
Start bp | 1026190 |
End bp | 1028097 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 645000182 |
Product | deoxyxylulose-5-phosphate synthase |
Protein accession | YP_003157474 |
Protein GI | 256828746 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAGC AAACCCTGCA GGAACTTTTT CCCATCCTGG CCGCCATCAA GAATCCCGGC GACGTGCAGG CCATGGATGA AAAGGAACTG ACCAGGCTTG GCGAAGAGAT TCGCCGCATG ATCATTCAGA CCGTGTCCAC CACGGGCGGG CATCTGGCCC CGTCCCTTGG CGTGGTGGAA CTGACCATGG CGCTGCTGCG CGTCTTCAAC CCGGCCCGCG ACCGCATCGT CTGGGACGTG GGGCATCAGG CCTATGCCTA CAAGCTGCTG ACCGGCAGGC TCGGGCGCTT CCACACCCTG CGTCAGTTGG ACGGAATCAG CGGCTTTCCC CGCATCTGCG AGAGCCCCTT CGATCATTTC GGCGTCGGCC ACTCCTCGAC GTCCATCTCC GCCGCCCTGG GCATGGCCGC CGCCCGCGAC CTGGCCCATC AGGATCACAA GGTCGTGGCC GTCATCGGCG ACGGCTCCAT GACCGCCGGG CTGGCCTACG AGGGCCTGAA CCAGGCCGGG GGGCTGGGCA AGAACATGGT CGTGGTCTTG AACGACAACG AGATGTCCAT TTCGCGCAAT GTCGGGGCGC TGTCGTCTTT CCTCAGCCGC AAGCTGTCCA AGCGCTGGGT GCAGCGCTTC AAGAAGGAAG CCGAATCCAT CATGCGCCAG ATCCCGAGGA TCGGTGACGA TCTGGCCGAA TACGCCCGCC GCAGCGAGGA CTCTCTCAAA AGTTTCTTCA CCCCCGGCAT GCTTTTCGAG GCTTTCCGCT TCACCTACAT CGGCCCCTTG CAGGGGCACG ACATGCGCAT GCTGACCAAT GTCTTTCAGC AGACCCGTGA ACTGGAAGGC CCCATTCTGG TCCATGTCCT GACCAAGAAG GGCAAGGGCT ACGCGCCGGC CGAAACCAAT CCGACCTTTT TTCACGGGGT GGGCTGCTTC GAACCCGAGA CCGGGGCGGC CCGAAAGTTC GCGGACTGTC CGCTGCCCAG CTACACCGAG GTGTTCGGTT CCACGCTGTG CAAGCTGGCC GAAAAGGACG AGCGCGTTGT GGCCATCACC GCCGCCATGC CCGAGGGCAC CGGGGTGAGC TGCTTCGCGG ACAGGTTTCC GGAACGCTTT TTCGATGTCG GCATCTGCGA GCAGCACGCC GTGACCTTTG CCGCCGGGCT GGCCTCGCAG GGCATGAAGC CCGTGGTGGC CATCTATTCG ACCTTCATGC AGCGTTCCTA CGACCAGATC GTGCACGACG TCTGCCTGCA GAACCTGAAC GTGACCTTCT GCCTGGACCG GGGCGGCCTG GTCGGCGAGG ACGGGGCCAC GCATCACGGC GTGTACGACC TGTCCTTTCT GCGCCATATC CCTGGGCTGG TGGTCATGGC TCCGCGCAAC GAACCCGAGC TGCAGCACAT GCTGGCCACG GCTCTGGCCC ATGAAGGCCC GGTGGCCTTG CGATATCCGC GCGGAGTGGG CGAGGGAGCG GCCCTGGTCG AGACGCCGGA AATTCTTCCC CTCGGCCGGG GCGAGTTGCT GCGCGAGGGA TCGGACGGAG TCATCGTGGC GCTGGGCAGC CGGGTCAACC CTGCCCTGGA GGCGGCGCGG ATGCTGTGCG AGGAGACAGG CAGGGAAGTG GCCGTGTTCA ACGCCCGTTT CGTCAAGCCG TTGCCCGAGG AGCATTTGCT GGCCTTGGCC GCCTCGCAAC CCTTTATGCT TCTGGTCGAG GAGAACGCCC TGCCCGGAGG CTTCGGTTCC GCCGTGCTTG AGCTTCTGGC TGACCACGAC GCGCTTTCCA GCCTGCGCGT GAAGCGGCTG GGCGTTCCGG ACCGCTTCAT TGAACACGGC AGCCAGAAGG AACTCCGGGC CCGGGTCGGC ATCAATAGGG ACGGGATTTT GAATACGTTG CGGGCGCTGG TCCGCTGA
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Protein sequence | MTEQTLQELF PILAAIKNPG DVQAMDEKEL TRLGEEIRRM IIQTVSTTGG HLAPSLGVVE LTMALLRVFN PARDRIVWDV GHQAYAYKLL TGRLGRFHTL RQLDGISGFP RICESPFDHF GVGHSSTSIS AALGMAAARD LAHQDHKVVA VIGDGSMTAG LAYEGLNQAG GLGKNMVVVL NDNEMSISRN VGALSSFLSR KLSKRWVQRF KKEAESIMRQ IPRIGDDLAE YARRSEDSLK SFFTPGMLFE AFRFTYIGPL QGHDMRMLTN VFQQTRELEG PILVHVLTKK GKGYAPAETN PTFFHGVGCF EPETGAARKF ADCPLPSYTE VFGSTLCKLA EKDERVVAIT AAMPEGTGVS CFADRFPERF FDVGICEQHA VTFAAGLASQ GMKPVVAIYS TFMQRSYDQI VHDVCLQNLN VTFCLDRGGL VGEDGATHHG VYDLSFLRHI PGLVVMAPRN EPELQHMLAT ALAHEGPVAL RYPRGVGEGA ALVETPEILP LGRGELLREG SDGVIVALGS RVNPALEAAR MLCEETGREV AVFNARFVKP LPEEHLLALA ASQPFMLLVE ENALPGGFGS AVLELLADHD ALSSLRVKRL GVPDRFIEHG SQKELRARVG INRDGILNTL RALVR
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