| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_0866 |
|---|
| Symbol | |
|---|
| ID | 8376521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 939830 |
|---|
| End bp | 941935 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645000105 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_003157400 |
|---|
| Protein GI | 256828672 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.711392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCCA CCCACCCTGC GCCAACCGCC AACTCTCCCA CTCCGGCCAG CATTCTTCTG
GTCGAAGACA ACGCCATTGT TGCCTTCGAC ATGCAACAGC GCCTGCAAAA ACTCGGTTAC
CAGGTCCAGG GCATCATCGC CTCCGGCGAA GAGGCCATAG CGGCCGTATC CAGGCAAGCC
CCGTCGCTCA TCCTCATGGA TATTTTTCTC GACGGAGGCA TCGACGGCAT CGAGGCGGCC
AAGGCCATCC TCGAAAACAC GCAGATTCCC ATCATCTACC TGACCGGGCA TGACGACGAA
GAAACCCTGA ACCGGGCCAA GATCACGGAA ACCTTCGGCT ACATCATCAA ACCCGCGGAA
TCCCGGGACC TGCACGTAGC CATCGAGATC GCCCTCTACA AACACGCCGC CGCGCAGGCG
CTGCAGAAAA GCGAACAGCA GTACAGGCTT CTTTTCGACT CCATGCTGAA CGGCTTCGCC
CTGCACGAGG TCGTGACCGA CGACAAGGGA AAACCCAGGG ATCTTCTTTT TCTCGATGTC
AACCCGGCCT TTGCCAGCTT TTTCGACCTG CCCGCGAAAG ACATTATCGG ACGCAGCCTG
CGTCAGCTCT CGGAGAAAGT CGAACCGTAC TGGATCGACA TCCTCGCCAA GACCGCCCTG
ACCCGCGAGT CCATCCGTTT CGACAGCTTC GCGGGATTTG TGGACAAGCA TTTCTCCGTG
GTCGCTTTTA GTCCCCAGCC TCGCCAGGTG GCCGCCATAT TCGAGGACAC CACCAGACGC
AAGGATGCCG AAAAGCATCT GCAGCACCGA ACCTTCCATG ACGCCCTGAC CAACCTGCCC
AACCGCGCCC TCTGCCTGGA CCGCATCCAG CAGGCCATGG AACGCAGCCA GGTGCGCGAC
GACTACCTTT TTGCCGTCGT GCAGATCGAC ATCGACCGTT TCAAGGACGT CAACGACAGC
CTCGGGCATC TCGTCGGCGA CCAGCTGCTC CAGTCCGTCG GACACGTCCT GCTCGATACC
GTATCAGCCG TGGACACGGT AGCGCGCCTC GGCGACGATG AATTCGTGGT GCTGCTGGAG
GAATTGCCCT CCAAAAAAAC GGGCACGGCC ACCATAAAGA AAATCAAGTC CGCGCTGAAC
CGCACCCTGG ACATCGAGCA CCACTCCATC CACATCAGCG CATGTTTAGG AGCGCTCTTC
GGCCCCAACG AATGCACTTC ACCCGAAAAC TTTCTGCAGG GAGCCAACAT CGCCCTGCGA
CACGCTCAGG AACAAGGACT CGATCAGCTC CGGTTTTACG CGCCGGAGAT GCAGGACAAG
GCCATCAAGA AACTGGATAC GGAAACACGA CTGCGCAACG CCATCAGCGA AAACGAGTTC
TTCCTCGCCC TGCAACCGAT TTTCTCCATT ACCCAGAACG CGACCTTGAG CGGTTTTGAA
GCCCTGCTGC GCTGGAAGCC CAAGCACAGG GGCTGGGTCC CCCCCAGCGA ATTCATCCCC
ATCGCCGAAC AGACCGGGCT CATCCTGCCC ATTGGGCAAT GGGTCCTGGA GCAGTCGTGC
AAGGTGCTTC ACTCCTGGGC CGAAAAATAC CCGGGAAATA CGCTCAGCGT GTCCGTCAAC
CTGTCCGCCC GCCAATTCTC CGACCCCGAC CTGGTGCACA ACCTGTTCAG CTGCATCCGC
CACAACCGGA TCAATCCCAC GCAGCTCAAG CTCGAGATCA CCGAAAGCGA CGTCATGACC
AACCCCGAGG CCACGATCCA GAAGCTTCGA ATCATGAAGG AGCTTGGCCT GGCCATTCTG
GTCGATGATT TCGGCACGGG GTATTCGTCC ATGAGCTACC TGCAGAGATT TCCCATCGAC
ACGCTCAAAA TCGACCGCAG CTTCGTGACC CAGCTGGACA AGCACGCCAA CCGCGTCATC
GTGCGCACCA TCATCAACCT GGCCCACAAC CTGGGCCTGT CCGTGGTCGC CGAGGGCATC
GAGACCGAGG CCCAGTGCCT CACGCTGCAG GAGATGGGCT GCGAGTATGC CCAGGGGTTC
CATTTTTCAA GGCCGATCCT GCTCGATGAA ATCGACGACT TCATCAGCCG GCATCTGAAA
AAATAA
|
|---|
| Protein sequence | MNSTHPAPTA NSPTPASILL VEDNAIVAFD MQQRLQKLGY QVQGIIASGE EAIAAVSRQA
PSLILMDIFL DGGIDGIEAA KAILENTQIP IIYLTGHDDE ETLNRAKITE TFGYIIKPAE
SRDLHVAIEI ALYKHAAAQA LQKSEQQYRL LFDSMLNGFA LHEVVTDDKG KPRDLLFLDV
NPAFASFFDL PAKDIIGRSL RQLSEKVEPY WIDILAKTAL TRESIRFDSF AGFVDKHFSV
VAFSPQPRQV AAIFEDTTRR KDAEKHLQHR TFHDALTNLP NRALCLDRIQ QAMERSQVRD
DYLFAVVQID IDRFKDVNDS LGHLVGDQLL QSVGHVLLDT VSAVDTVARL GDDEFVVLLE
ELPSKKTGTA TIKKIKSALN RTLDIEHHSI HISACLGALF GPNECTSPEN FLQGANIALR
HAQEQGLDQL RFYAPEMQDK AIKKLDTETR LRNAISENEF FLALQPIFSI TQNATLSGFE
ALLRWKPKHR GWVPPSEFIP IAEQTGLILP IGQWVLEQSC KVLHSWAEKY PGNTLSVSVN
LSARQFSDPD LVHNLFSCIR HNRINPTQLK LEITESDVMT NPEATIQKLR IMKELGLAIL
VDDFGTGYSS MSYLQRFPID TLKIDRSFVT QLDKHANRVI VRTIINLAHN LGLSVVAEGI
ETEAQCLTLQ EMGCEYAQGF HFSRPILLDE IDDFISRHLK K
|
|---|
| |