Gene Dbac_0102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_0102 
Symbol 
ID8375735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp123105 
End bp126260 
Gene Length3156 bp 
Protein Length1051 aa 
Translation table11 
GC content64% 
IMG OID644999331 
Producttransporter, hydrophobe/amphiphile efflux-1 (HAE1) family 
Protein accessionYP_003156647 
Protein GI256827919 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACATT TTTTCATCAA TCGCCCGGTA TTCGCCTGGG TTCTGGCCAT CGCCGCCATG 
CTTGGCGGCG TGCTGGCCAT AACGGGCCTG CCCATCTCCC AGTATCCGCC CATCGCTCCT
CCATCGGTGG CCATCAGCGC GACCTATCCA GGCGCGTCGG CCAAGACCCT GGAAGATGCG
GTCACCCAGG TCATCGAACA GAAGATGAAG GGCATCGACA ATCTGGACTA CATGTCCTCG
ACCAGCCAAT CCTCGGGTCA GGCCGAAATC ACCCTGACCT TCAAGGCCGG CACCAACCCG
GACATTGCCC AGGTACAGGT CCAGAACAAG CTGCAACTGG CCATGGCGCT GCTGCCGCAG
GAAGTGCAGG CCCAGGGCGT GCAGGTCACC AAGGCGGTCA GGAACTTCGT ACAGGTGCTC
GGCTTCGTTT CCGAAGACGG GTCCATGGCC AGGGCGCAGC TGGCCGACTA TGTGGCCGCC
AATGTTCTTG ACGGCATGAG CCGCGTGGAA GGAGTCGGCG AGGTCACCCT GTTCGGCTCG
CAGCACGCCA TGCGCATATG GCTCAATCCT GACCAGTTGC ATACCTACAG CCTCACCCCG
GCGGACGTCG CCGCCGCCAT CAAGGCCCAG AACGCCCAGA TCTCCGCCGG TCAACTGGGC
GGACTGCCTT CGGTTGCGGA ACAGCGCATC AACTTCACGG TCAGCGTCCA GGACCGTCTT
CAGACTCCCG AGCAATTCCG GAACGTCCTC TTAAAGACCA ACACCGACGG ATCCACGGTG
CGTTTGGGCG ACGTCGCCAA GGTGGAACTG GGGGCGGAAA ATTCGCAGGT CGTCTCCCGA
TACAACGGTC AACCCTCGGC GGCCCTGGCC ATCAAGCTGG CCACCGGTGC CAATGCGCTG
AAGACCGTCG AGGCCATCGC CGAATACACG GACAGCATCA GTTCGACCTT CCCCGCCGGA
TTGAAGGTCG TGGAAGCATT CGACACCACG CCCTTCGTGC GCATCTCCAT CGAAGAGGTG
GTCCGCACCC TGCTGGAGGC CGTGGTCCTG GTCTTTCTGG TCATGTACCT CTTTCTGCAG
AACTTCCGGG CCACGCTCAT CCCGACCATC GCCGTGCCCG TGGTTCTGCT CGGCACCTTC
GGGGTGCTGG CGGCCTTCGG CTATTCCATC AACACCCTGA CCATGTTCGC CATGGTCCTG
GCCATCGGCC TGCTGGTGGA CGACGCCATC GTCGTGGTCG AAAACGTCGA ACGAATCATG
CATGAAGACG GCTTGTCGGC CAGGGACGCG ACCCACCTGT CCATGACCCA GATCTCCGGG
GCCCTGGTCG GCATCGCCCT GGTGCTGTCC GCCGTCTTCG TACCCATGGC CTTCTTCGGC
GGCTCCACGG GCGTCATTTA CCGCCAGTTC TCCATCACCG TGGTCTCGGC CATGGTCCTC
TCCGTCCTGG TGGCCCTGAT CCTGACCCCG GCCCTGTGCG CCACCATGCT CAGGCCTGCC
AAGCCCGGCC AAGGCAAGCG CGGCTTCTTC GGCCTGTTCA ACCGTGGCTT CGACCGCACC
GCGAACGGCT ATCAGAAGCT GGTCGGGTCC ATGACCCGGC GCTGGGGGCG ATCGATGATC
CTCTACGCCC TCATCCTGGC CGCCATGATG TTCCTGTTCC AGCGGCTGCC CACGGGCTTT
CTCCCGGACG AGGACCAGGG CATGCTCTTC GTGCAGGTCC AGTTGCCCAT CGGCGCGACC
CAGGACCGCG CCCTGAATGT GCTGGAACGC ATCGAAACCC ACTTCCTGGA AGCCGAGAAG
GACTCCGTGC AATCGCTCAT GGCCGTGGCG GGCTTCAGTT TCGCCGGCAG CGGCCAGAAC
ACGGCCATGT GCTTCGTACG TCTGAAGGAC TGGAGCATGC GCAAGGGTCC CGACACGCAC
GTCAAGGCCA TTGCCGGACG TGCCATGGCC GCCTTCTCGC AGTACCGCGA CGCGCAGGTC
TTCGCCTTTG CCCCGCCGGC GGTGATGGAA CTGGGCAACG CGGCCGGCTT CGACTTCGAG
TTGCAAGACA TGGCAGGCCT CGGCCACGAA AAGCTCACCG CCGCCCGCAA CCAGCTTCTC
GGCATGGCCA GCCAGCATCC GGATCTGGCC ATGGTCCGCC CTAACGGCCT GGACAACACG
CCGCAGTATC GCATCGACAT CGACTGGGAC AAGGCCGGCG CCCTGGGTCT GGCCGTGTCC
GACGTGACCG GCGTCATCGC CACGGCCTGG GGCAGCTCCT ATGTCAACGA CTTCCTGGAC
AAGGGGCGCG TCAAGAAGGT CATCATGCAG GGCGAGGCGC CCTACCGCAT GATGCCCGAA
GACCTCGCCC GCTGGCACGT GCGCGGCAAA TCCGGCCAGA TGGTACCAAT GTCGAGCTTC
GCCACGGCGC ACTGGACTTC GGGTTCGCCC CGTCTGGAGC GCTACAACGG CGTCCCGGCC
ATGCAGATCC TCGGCGCGCC AGCACCGGGC AAGAGCTCGG GCCAGGCCAT GGCGACCATG
GAGAACCTGG CCGGCCAGTT GCCTGAAGGC ATCGGCTACT CCTGGACGGG CCTGTCCTTC
CAGGAACGCC AGGCCGGTTC CCAGACCGCC CTGCTCTACG GTCTCTCCAT CCTCGTGGTC
TTCCTTTGCC TCGCGGCCCT GTACGAAAGC TGGAGCCTGC CGGCATCGGT CATCCTGGTC
GTGCCCATCG GCGTCGTCGG GGCACTGGCC GCCGTCAGTC TGCGCGGCCT GACCAACGAC
GTTTACTTCC AGGTCGGTCT GCTCACGACC ATGGGCCTGG CAGCCAAAAA CGCCATCCTC
ATCGTCGAGT TCGCCAAAAG CCTGGCCGAA TCGGGCATGG ACCTCATGAC CGCAGTGGTC
GAGGCGGCCA GACAGCGCCT GCGGCCCATC CTCATGACCT CCCTGGCCTT TGGCCTGGGC
GTTCTGCCGC TGGCCCTGAA CTCCGGAGCG GGGTCCGGCG GGCAGAACTC CATCGGCACG
GGCGTTATCG GCGGCACCAT CGCCTCGACC ATCATCGGCT CCCTGCTTAT CCCGGTCTTC
TTCGTCATCG TGGCCAAGAG GGGACTCTCC CGCAAGGAAC CCAAAAACGC GACCACTCGC
GCCATAATCC CCGGAGGCCA CCCATGCGAA GATTGA
 
Protein sequence
MAHFFINRPV FAWVLAIAAM LGGVLAITGL PISQYPPIAP PSVAISATYP GASAKTLEDA 
VTQVIEQKMK GIDNLDYMSS TSQSSGQAEI TLTFKAGTNP DIAQVQVQNK LQLAMALLPQ
EVQAQGVQVT KAVRNFVQVL GFVSEDGSMA RAQLADYVAA NVLDGMSRVE GVGEVTLFGS
QHAMRIWLNP DQLHTYSLTP ADVAAAIKAQ NAQISAGQLG GLPSVAEQRI NFTVSVQDRL
QTPEQFRNVL LKTNTDGSTV RLGDVAKVEL GAENSQVVSR YNGQPSAALA IKLATGANAL
KTVEAIAEYT DSISSTFPAG LKVVEAFDTT PFVRISIEEV VRTLLEAVVL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF GVLAAFGYSI NTLTMFAMVL AIGLLVDDAI VVVENVERIM
HEDGLSARDA THLSMTQISG ALVGIALVLS AVFVPMAFFG GSTGVIYRQF SITVVSAMVL
SVLVALILTP ALCATMLRPA KPGQGKRGFF GLFNRGFDRT ANGYQKLVGS MTRRWGRSMI
LYALILAAMM FLFQRLPTGF LPDEDQGMLF VQVQLPIGAT QDRALNVLER IETHFLEAEK
DSVQSLMAVA GFSFAGSGQN TAMCFVRLKD WSMRKGPDTH VKAIAGRAMA AFSQYRDAQV
FAFAPPAVME LGNAAGFDFE LQDMAGLGHE KLTAARNQLL GMASQHPDLA MVRPNGLDNT
PQYRIDIDWD KAGALGLAVS DVTGVIATAW GSSYVNDFLD KGRVKKVIMQ GEAPYRMMPE
DLARWHVRGK SGQMVPMSSF ATAHWTSGSP RLERYNGVPA MQILGAPAPG KSSGQAMATM
ENLAGQLPEG IGYSWTGLSF QERQAGSQTA LLYGLSILVV FLCLAALYES WSLPASVILV
VPIGVVGALA AVSLRGLTND VYFQVGLLTT MGLAAKNAIL IVEFAKSLAE SGMDLMTAVV
EAARQRLRPI LMTSLAFGLG VLPLALNSGA GSGGQNSIGT GVIGGTIAST IIGSLLIPVF
FVIVAKRGLS RKEPKNATTR AIIPGGHPCE D