| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1277 |
|---|
| Symbol | |
|---|
| ID | 6026242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1343008 |
|---|
| End bp | 1346505 |
|---|
| Gene Length | 3498 bp |
|---|
| Protein Length | 1165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641594094 |
|---|
| Product | UvrD-like DNA helicase, C terminal |
|---|
| Protein accession | YP_001717420 |
|---|
| Protein GI | 169831438 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3857] ATP-dependent nuclease, subunit B |
|---|
| TIGRFAM ID | [TIGR02773] ATP-dependent nuclease subunit B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCTTTGC GGTTTATCCT GGGGCGGGCC GGTACCGGCA AGACCCGGCT CTGCCTGGAA
GAGATCCGGA AAGAACTGCG GCAGGCGCCC GACGGGCCGC CGCTTGTTTT TCTCGTGCCT
GAGCAGGCCA CCTTTCAGAC CGAGTACGCG CTCGCGCTCA CCCCGGGCCT GTCCGGGATG
TTCCGGGCCC AGGTGCTGAG TTTTCGCCGC CTGGCCTGGC GGGTGTTCTC GGAGGTGGGC
GGGGCGGCCC GCCCGCATGT CGGCGACGTG GGCAAGCGGA TGATGCTCGC CCGGATTCTG
GCGCGTCGGC GGAACGAACT GCGCCTCTTC GGGCGGGCCG CCGGACAGTA CGGCTTTTCC
GGTACCCTGG CGGGCGTGCT CTCCGAACTG AAGACCTACC TGGTCACCCC CGAGGCCCTG
GAACAGGCCG TCCGCATGCT GCCCGGCACC GCCGAGACGG ACTCCCTGCA GGCCAAGCTG
GAGGACCTGC GCTTGCTCTA CACCGACTTC GAACGTGAAC TCGCCGGGAA ATACATCGAC
CCGGACGACT ACCTGACCCT GCTGGCCGCC CGGCTTGGGG AAAGCCCCAC GCTGCGGGCG
GCCGAGGTGT GGGTGGACGG GTTCGCCGGC TTCACGCCGC AGGAGTACGC GGTGCTGGAG
GCGCTCTTGA AGGCGGCCGC CCGGGTGAAC GTGGCGCTCT GTCTGGACCC GCGTTCGGGG
CGGCGCGAAG ATTTGGAGCT TTTCCAGGTG ACCCGGGACA CCCGGGCGCG GCTGGCCGAG
TTGGCGCGCA AAAACGGGGT GGAACTGGAG CGGCCGGTGG AGCTGGCCGG GCCGCCGGCG
CGGTTTCGGG CGAACCCCGC GCTGGCCCAC CTGGAGCGGG AGTTCTTCCG CCGCCCTACC
AAAAAGTTTG CCGGCCCGCC GGAGAACTTG CGCCTGGTTG CGGCCGCAAG CCGCCGGGCG
GAGGTGGAAG GGGCAGCCCG GGAAATCCTG CGCTTGAGCC GGGAGCGGGG CTGGCGCTGG
CGGGACGTGT CCCTGGTCGT CCGGAACCTG GCGGACTACC ATGAACTCGT GGCCACGGTG
TTCGCCGACT ACGGCATCCC GTGCTTCATC GACCGCAAGC GCCCGGTCCG GCACCACCCG
CTGGTCGAGC TGATCCGCTC GGCCCTGGAG ACGGTGACCG AGAATTGGAC CTACGATCCG
GTGTTCCGGT ACCTGAAGAC CGACTTGGTG CCGGTATCCC GTGGGGACGT GGACCTATTG
GAGAACTACG TGCTGGCCCA CGGCATCAAG GGGGCGAAGT GGGCGGACCC GGAAGACTGG
CACTACCGGC GCTCGGACGC GCTGAACCGA CCCGTGCCTA ACGGCACGGG TGCCCCGGCG
CCATCCGACC GCGATCGGTA CTTGCGGGAA AAGGTGAACC GCATCCGGCG GCGTGCGGCG
CGGCACCTGC TGGACTTCCA GCGCCGCGTT CAGGCGGCCG GGACGGTGCG AGAGCTGACC
GCGGCCCTGT ACGACCTTTT GAGCGACCTG GACGTGCCCG GACGGATCGA GGAGTGGAGC
CGGGAGGCCG AGACCGAGGG GCGGCTGGAG GCCGCCCGCG AACATCGGCA ACTCTGGGAC
GGCGTGGTTG AACTTCTTGA CCAGGTGGTG GAAACCCTGG GGGACGAGGC CCTGACCCCG
GAGGAGTACG GGCGGATCCT CGACTCCGGG ATGGACGGGC TCCAGCTCGC CCTGATTCCG
CCGGCGCTCG ACCAAGTGCT GGTCGGTTCC CTGGAACGGT CCCGGAACCC GGACATCCGG
GCGGCCTTCG TGCTCGGGGT GTCCGAGGGT GTCCTACCAG GCCGCCACGG CGGCACCGGG
CTTTTCACCG ACCGGGAGCG GGAGGTGCTG CTCGCCGCCG GCCTGGAGGT GGCGCCCGAC
ACCCGCCGGA AGGTCTACGA GGAGCAGTAC CTGGTGTACA TCGCCCTGAC CCGCGCCGGC
CACTACCTGT GGGTGAGCTA CCCGTTGGCC GACGAGGAGG GGGGCGCCCT GGCCCCGTCC
AGTGTCATTC CCCGGCTCCG GGAGCTTTTC CCCGGGCTCC GGGAAGAGAC GCTGGCCCTG
GAACCCGAGG GGACCGCGCC CGGCGCGGAC CTTCCTTACG TCACGGCGCC CGGCCGCACC
CTGGGCTTTC TGGTCACCAG GCTCCGGGAC TGGAAATCAG GCGTGACGGT GGACCCGGTG
TGGTGGTCGG TATTCAACTG GTTCGCTGCT CACGCCGGCT GGCGGGAGCG GTGCGCTCCC
GTGCTGGCCG GCCTTTTTTA CGAAAACCGG GAACCGCGCT TGGACCCGGA ACTGACCCCG
GAACTGTATG GGAGCCGGCT GGTGGTCAGC GTGTCCCGGC TGGAGGAATT CCGGGGCTGC
CCGTTCGCCC ACTTCGCCCG CTACGCCCTG CGGCTTAAGG AGCGGGACGT GTGTCGGCTG
GCCGCGCCGG ACATCGGGCT TTTTTTCCAC GCCGCGCTCA AGACCTTCGA GGACCGGCTG
CGGGAGGCCG GCATGGAGTG GGACGCGCTG GAGAGTGCGG ACTGTACCCG GCTGGCGTCC
GCAGTGGTGG AGGAACTGGC GCCCCAACTG CAGAGCGAGG TTCTCTTAAG TTCGCCGCGC
CTCCGGTTCC TGACCGGCAA GCTGGAGCGC GTGGTGGAGC GGACCGCCGG GGTGATGGCC
GCCCACGCCC GGCATAGCCG CTTCCAGCCG GTGGCGGTGG AAGTCGCGTT CGGGCCGGGG
CGGGACGTGC CGGGGCCGGC GTACCCGCTC CCCGGCGGCG GCTCGGTGGA GCTGGCCGGA
CGGATCGACC GGGTGGACGT GGCCCACACC GATAACGCCG CGTACCTGCG GGTGATCGAC
TATAAGGCGG GACCCCGGAG CCTGGCGCTG GACGACGTCT ACTACGGCTT GAACCTGCAG
CTTTTGGTGT ACCTGGAGGC TGGCCTCAGA GAGGCGGCGG CGCTGGCGGG CCGGGAGTGC
CGGCCGGCAG GCGCCTTCTA CTTCCGGGTA CAGAACCCGC TCCTCAAGGG CGGGACGCCG
GTGCCGCCGG CGGAGGTGGC GCCGCGCCTC TTGAAGGCTT TCCGCCTGCA GGGTCTGGTG
CTGGACGATC CAGCGCTCCT GCGCCTGATG GACGACGCCA TCGGGAGCGA GTCGGCGATC
GTGCCCGCCG GGTTGAAGCA GGACGGGACG GTGAAAAAGA AGCCGGGCGT CGTGAGCGCG
GCGCAGCTCG AACGGCTGCA GGAGCACGTG CGCCGGGTGG TTGCGGAAAC GGCGGCGGAA
ATCCAGGCCG GCGTGGTGGC CATCGCCCCG TACCGCAAGG GTCAGGCCAA CGCCTGCCGG
TACTGCGCTT TCAAGCCGGT GTGCGCCTTC GACCCCCTGC TGGAATCGAA CCGCTACCGG
CAGCTCCGCG CCCTGACCGC CGGGGAGCTG TGGCGCCTGT TGGGGCTGCC GGAGGAGGAT
GAACCGGGCG ATGAGTAG
|
|---|
| Protein sequence | MALRFILGRA GTGKTRLCLE EIRKELRQAP DGPPLVFLVP EQATFQTEYA LALTPGLSGM
FRAQVLSFRR LAWRVFSEVG GAARPHVGDV GKRMMLARIL ARRRNELRLF GRAAGQYGFS
GTLAGVLSEL KTYLVTPEAL EQAVRMLPGT AETDSLQAKL EDLRLLYTDF ERELAGKYID
PDDYLTLLAA RLGESPTLRA AEVWVDGFAG FTPQEYAVLE ALLKAAARVN VALCLDPRSG
RREDLELFQV TRDTRARLAE LARKNGVELE RPVELAGPPA RFRANPALAH LEREFFRRPT
KKFAGPPENL RLVAAASRRA EVEGAAREIL RLSRERGWRW RDVSLVVRNL ADYHELVATV
FADYGIPCFI DRKRPVRHHP LVELIRSALE TVTENWTYDP VFRYLKTDLV PVSRGDVDLL
ENYVLAHGIK GAKWADPEDW HYRRSDALNR PVPNGTGAPA PSDRDRYLRE KVNRIRRRAA
RHLLDFQRRV QAAGTVRELT AALYDLLSDL DVPGRIEEWS REAETEGRLE AAREHRQLWD
GVVELLDQVV ETLGDEALTP EEYGRILDSG MDGLQLALIP PALDQVLVGS LERSRNPDIR
AAFVLGVSEG VLPGRHGGTG LFTDREREVL LAAGLEVAPD TRRKVYEEQY LVYIALTRAG
HYLWVSYPLA DEEGGALAPS SVIPRLRELF PGLREETLAL EPEGTAPGAD LPYVTAPGRT
LGFLVTRLRD WKSGVTVDPV WWSVFNWFAA HAGWRERCAP VLAGLFYENR EPRLDPELTP
ELYGSRLVVS VSRLEEFRGC PFAHFARYAL RLKERDVCRL AAPDIGLFFH AALKTFEDRL
REAGMEWDAL ESADCTRLAS AVVEELAPQL QSEVLLSSPR LRFLTGKLER VVERTAGVMA
AHARHSRFQP VAVEVAFGPG RDVPGPAYPL PGGGSVELAG RIDRVDVAHT DNAAYLRVID
YKAGPRSLAL DDVYYGLNLQ LLVYLEAGLR EAAALAGREC RPAGAFYFRV QNPLLKGGTP
VPPAEVAPRL LKAFRLQGLV LDDPALLRLM DDAIGSESAI VPAGLKQDGT VKKKPGVVSA
AQLERLQEHV RRVVAETAAE IQAGVVAIAP YRKGQANACR YCAFKPVCAF DPLLESNRYR
QLRALTAGEL WRLLGLPEED EPGDE
|
|---|
| |