| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0935 |
|---|
| Symbol | |
|---|
| ID | 6026836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 995286 |
|---|
| End bp | 996131 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641593747 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001717080 |
|---|
| Protein GI | 169831098 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0476216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGACTGG CGGTTTTGAC GGCAGTTCTC TGTCTGGCCG TGGGCGGGCT CTGGTGGCGG
TGGTCACCGG CCGTTCCGGC CACCGGGCCG CAGCCGGTCT ACCACGGTCC GGGGGACTCG
CGGGCGGTGG CGCTGGCGGT GAACGTGGAC TGGGGTGAGG AGTGCGTCCC CGAGATACTG
AACATTTGCC GGGAACACGA CATACACCTC ACCTTCTTCG TCACCGGGCG GTGGGCCGGC
AAGTTTCCCG ATCTGGTGCG CCGGATGGCG GAGGAAGGTC ACGAGATCGG CAACCACGGG
TTCGGACATC CCCATCCCGA CATGCTGTCC GTGGAACAGA ACTTGCGGGA CATCCAGCGG
GCCGAGACCG TGATCCGGGG AATCATCTCG CGGCGCACCA CGTTGTTTGC CCCGCCCTAC
GGGGAACGCG GCCCGGCGGT GCTCCAGGCC GCCGGGCAAG CCGGGTACCG GACGATCCTG
TGGAGCGTCG ACACGTTGGA CTGGAAGGTC CGCAACGCCG ATGTGATCAC CGGCCGGGTG
GTGAACCGGG TACACCCCGG GGCGATTGTG CTCATGCACC CGTTGGACGC CACCACTAAG
GCGCTGCCGG TGATCATCAC GGAATTGGAA AAGGACGGTT ACCGGTTTGT GACGGTAAGC
CGGTTGCTGG GAGTGGGGTC GGAAACCAAA CCGGAAAGCG CTCAAGGCCC TCGGCGAGAA
ACCCGGAGCG GGCAACAGTT CGTTAGAACC CGGCATCGCG GGATATGGTC CGCGGGGAAG
GAGTTTCCAG CCCCGGGGCG AATAGAAGCA GGCAGTGCAG TAATTTTGGA GGTATGTAGC
AGATGA
|
|---|
| Protein sequence | MRLAVLTAVL CLAVGGLWWR WSPAVPATGP QPVYHGPGDS RAVALAVNVD WGEECVPEIL
NICREHDIHL TFFVTGRWAG KFPDLVRRMA EEGHEIGNHG FGHPHPDMLS VEQNLRDIQR
AETVIRGIIS RRTTLFAPPY GERGPAVLQA AGQAGYRTIL WSVDTLDWKV RNADVITGRV
VNRVHPGAIV LMHPLDATTK ALPVIITELE KDGYRFVTVS RLLGVGSETK PESAQGPRRE
TRSGQQFVRT RHRGIWSAGK EFPAPGRIEA GSAVILEVCS R
|
|---|
| |