Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daud_0600 |
Symbol | |
ID | 6025471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Desulforudis audaxviator MP104C |
Kingdom | Bacteria |
Replicon accession | NC_010424 |
Strand | + |
Start bp | 636869 |
End bp | 639004 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641593429 |
Product | DNA topoisomerase I |
Protein accession | YP_001716766 |
Protein GI | 169830784 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00101448 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAGAAGA CTCTGGTGAT TGTTGAATCC CCGGCCAAGG CCAGGACGCT CGGCAAGTTC CTGGGGAAAA AATACGAGAT TCGGGCTTCC ATGGGGCACG TCCGTGATCT TCCCCGGAGC CAGTTCGGCG TGGACGTTGA TGACGGGTTT AAGCCCAAGT ACATTACCAT TCGGGGCAAG GGAGACGCCA TCAAGGAACT GCGGGCCGCC CGCAAGAAGT CGAACCAGGT GCTTTTGGCT TCGGACCCCG ACCGTGAAGG GGAAGCTATC GCCTGGCACC TGCAGGAACT GCTCCAGATT GACCCTGAAG AGCCTTGCCG CGTGGAATTC AATGAAATCA CCAGGGAAGC GGTGACGGCG GCGATCAAGA ATCCTCGCAA GATCGACCCG AACCGGGTTG ACGCCCAGCA GGCGCGGCGG ATTCTGGACC GGCTGGTCGG CTACAACCTG AGCCCCCTGC TGTGGCGCAA AGTTCGCAAG GGTTTGAGTG CCGGCCGGGT GCAGTCGGTG GCGGTGCACC TGATCTGTGC GCGCGAGCGG GAGATCGAAG CCTTCGTGTC CGAGGAATAC TGGACGCTTA CCGCGCTCCT GGCCAACAGG GAGCGCGAAA GGTTCAAGGC CCGGTTGCTC AAGAAAGCCG GGGAGAAGCT CACGGTGCCG AACGAGGAGG CCATGAAGGG GATCCTGGAC GACCTGAAGG AGGAAGTTTA CCGGGTCGCG GATGTGATCC GGAAAGAGAA AAAGAAAAAC CCGTCCCCCC CGTTCACCAC CAGCACCCTG CAGCAGGAGG CCTACCGGCG CCTGAATTTC ACCACCCGGA AGACGATGAT GGTCGCCCAG CAGCTTTACG AGGGTCTGGA CCTGGGTAAG GAAGGGCCGG TCGGCCTGGT CACCTATATC CGGACTGATT CGACCCGGAT TTCCCCCGGA GCCCAGGACG AGGCCCGGGA GTACATCGCC GAACACTACG GTAAGGAGTA CGTGCCGAAG CAGAAAAGGG TGTACACCGG CAAGGCGCGG GCCCAGGACG CGCATGAGGC CATCCGGCCC ACGTCTGTGT TGCGGACTCC GGAGGCGCTG AGAAAGTACC TGAATCCGGA CCAGCTGCGC CTGTATGAAT TGATCTGGTC CCGTTTTCTC GCGAGCCAGA TGGTTAGCGC GGTTCTGGAC ACGGTGCGGG CCGAAATCGT GGCCGGAGAG TACCTTTTCC GGGCCACGGG CTCCACGGTG AAATTCCCCG GCTTCACGCG GGTCTACACC GAGTTGCGGG ACGAGGCCAA AAACGGCGAG GAGGAAGAGG AAGGGGCGCT CCCGGCGCTT GAAAAGGGGG AGCAGCTGAA ACTGGTGCGC ACCACGCCGG CCCGGCACTT TACGCAGCCG CCGGCCCGGT ACACGGAAGC CACCCTGGTG CGAACCTTAG AGGAACTTGG CATCGGCCGT CCGAGCACGT ATGCGCCGGT GGTGGAGACA ATTCAGCGGC GGGGCTACGT GGTCCGGCGC GGTAAAACGC TCCACCCGAC CCAATTGGGT TTGGTGGTCA TCGACCTTTT GAAGGAACAC TTCCCGGACG TAATCAACTA TGAGTTCACC GCCGAGTTGG AGGAAAAACT GGACCGGATC GAAGAAGGAT CCATGCAGTG GGAAAAGGTG CTCGAGGAGT TCTACCGGCC CTTCCGCCGG GAAGTCGCCG AGGCGGAAGC GAAGATCGAC CGGGTCCGGC TGGACGAGGT CACCGACGAG GAGTGCCGGA AATGCGGCCG CAAAATGGTG ATCAAGATGG GTCGGTACGG CAAGTTCCTG GCCTGCCCCG GGTTTCCCGA ATGCCGCCAT ACCCGGCCGA TCTTCGAGGA GACCGGCCAC CGCTGTCCCA AGTGCGGCGG CCGGGTGGTG GTCAGGCGGA CCAAGAAGAG CAAAGTTTTC TACGGTTGTG CCGGATACCC CGGGTGTGAT TTCGTGACCT GGGACCAGCC GACCGACCAG AAATGCCCCG ACTGCCAGTC TTTCCTGGTG GCCAGGGGCA CCCGGGGGCA CCCGCTTCAG CGGGTCAGCG GGTCAGCGGG TCAGAGCCGC ACCTTTGCCT GCGCCAATCC GGAATGCGGC TACAAGGAAC GCAAAGCCGG ACGGGGAAAG GCCTGA
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Protein sequence | MEKTLVIVES PAKARTLGKF LGKKYEIRAS MGHVRDLPRS QFGVDVDDGF KPKYITIRGK GDAIKELRAA RKKSNQVLLA SDPDREGEAI AWHLQELLQI DPEEPCRVEF NEITREAVTA AIKNPRKIDP NRVDAQQARR ILDRLVGYNL SPLLWRKVRK GLSAGRVQSV AVHLICARER EIEAFVSEEY WTLTALLANR ERERFKARLL KKAGEKLTVP NEEAMKGILD DLKEEVYRVA DVIRKEKKKN PSPPFTTSTL QQEAYRRLNF TTRKTMMVAQ QLYEGLDLGK EGPVGLVTYI RTDSTRISPG AQDEAREYIA EHYGKEYVPK QKRVYTGKAR AQDAHEAIRP TSVLRTPEAL RKYLNPDQLR LYELIWSRFL ASQMVSAVLD TVRAEIVAGE YLFRATGSTV KFPGFTRVYT ELRDEAKNGE EEEEGALPAL EKGEQLKLVR TTPARHFTQP PARYTEATLV RTLEELGIGR PSTYAPVVET IQRRGYVVRR GKTLHPTQLG LVVIDLLKEH FPDVINYEFT AELEEKLDRI EEGSMQWEKV LEEFYRPFRR EVAEAEAKID RVRLDEVTDE ECRKCGRKMV IKMGRYGKFL ACPGFPECRH TRPIFEETGH RCPKCGGRVV VRRTKKSKVF YGCAGYPGCD FVTWDQPTDQ KCPDCQSFLV ARGTRGHPLQ RVSGSAGQSR TFACANPECG YKERKAGRGK A
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