Gene Daud_0538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0538 
Symbol 
ID6026415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp575328 
End bp577910 
Gene Length2583 bp 
Protein Length860 aa 
Translation table11 
GC content66% 
IMG OID641593374 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001716711 
Protein GI169830729 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2206] HD-GYP domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00277] uncharacterized domain HDIG 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.883741 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGGGCAAC GGGTGGTGGA TAGCGTGAAC TCAGGACGGC GAACGGAAAA GACAGAGTGG 
GGACTGGGCT TTCTCGAGAG GATCGTCGAC TCCCTCCCGG ATGGCGTCCT TGCCGTCGAC
CGCGAAGGCA GGGCGGTCGT GTGGAACCGG GCCGCGGAAG AAATGACGGG AGTCAGGAAG
GAAGAAGTGC TGGGCAGGGG CGAATACGCC TATGCCGTCC CGTTTTACGG GGAACCCAGG
CCCATCCTCG TAAACATCCT GCTGGGCAAC GGTAGGGAGT GGGAGCGGAA GTACGAGAAA
ATCGAGCGGA AGGGCCAGGT TCTTGTCGGC GAAGGTTTTG CCCCTTACGC TTACGGCGGC
AGAGGCCTTC ATTTCTGGAC CATTGCGGCG CCAATCTATG ATGAAGCGGG AAACTTGCTC
GGGGCGGTCC AGTGCATCCG CGACATCGGC GAGCGCAAGC AGATGGAGGA TAAACTGAGG
CACTGGAGCA CCCATGACGC TCTCACCGGG CTTTACAACC GCGCCTTCTT CGAGGAGGAA
CTGCGGCGGC TGGAGAAAGG TCGCTCCTTT CCTGTAAGTC TCATCCTCTG CGACATCGAC
GACCTGAAGG TGGTTAACGA CACCTTGGGC CACGCGCGGG GCGACGAGCT CTTACGCCGC
GCCGCCAGGG TGATCGCCAG CTGCGTCCGG GGGTCCGACC TGGTGGCCCG GGTCGGCGGA
GATGAATTTG CCGCGGTGCT GCCGCAAACG GACCGGGCGG CGGCGGAGGA AGTGGCGCGG
CGCATAACCC AGGCCGCGGC GGAGGATAAT GCGGGGCGCC CCGAGTTCCC CCTGAGCATT
TCGGTGGGCA CGGCCACGGC CGAAGATCCG GGGCGTCCGC TGGTCGAGGC ATACAAAGAG
GCCGACGACG CCATGTACAG GGACAAGCTG GCCCGGGGGG CGGAGCCGCG AGAGGCCTGG
AAGAAAGCGG ACGAAATGGC CTTTCTCTAC GACTTCTCCC GAACGGTACA AGAAACCCTC
GAGGTAAGCG AGGTGGCGCA GCGGGCCCTG GAGGCGGTGC TGAAGGTGAC CGGCGCCACC
AGCGGGTCCG TGGTGATGCT GAGCGAGGAG ATGCCGGGGG CCCTGGCTGC CGAGACGGCG
GCGACCCTGG AGCCCGGCGA CGAGTTCCGG GTCGTGCCGG CCGGCGAAGT CGTTGCCGCC
GTCGAGCGGG AAACGCGCGC CGTGCACTTC GACAGCCGCC CCGGAGCCGG TACGGCCGCA
GAAAGGCGGC CGGCGGTAGC CGTGCCCCTC ATGGTAGAGG GCAAGGTGAC GGGCGTGCTG
ACCATCGCGG GCCGGCCGGA AGGCGCGCCC TTCAGCGAGG AGGAGGCCGC TTTCTTGACC
ACCCTGGGCA CCGGCCTGGG GCTGACGCTG CAAAACGCCC GCCTTTATCG TCAACTCCAG
GCGAGGGCGG CCATGCTGGA ACGCCTGATC GAGCTGGGAC AGGCGCTGGC CGGCCACCTC
GAGGAGAGCA AGGTGCTCGA AGCAGCTCTG GCTGGTGTAG GGGAGGTCCT TGGCGCGCAG
TGGTATGCGC TGTGCCTGCT TGATGAGGAG ACGGGCGAAC TGGTGCTCAA GGCCAGCTCG
GGCATGAGCG CGGAGCTGCA GGGAAGAGCG GCCCGTGTCC GGCCGGAGGG CAGCCTGCTG
GGCGAAGTGC TCCGGAGAGG GGAGCCGGTG GCGGTGGACG ATACGGCCGC CGCCGGGCCC
GGCATGCAGC TGCCCTATTA TGCGCCCGAG ATGCGGGCGG TGGCTGTGGC GCCGGTAAGA
GCGGGGGGCA AGATTCTGGG CACCCTGAAG GTGTACTCTC CAGTACCGCG ACGCTGGTCA
GAAGAAGAAG TTGGGTATCT GGCCACCGTG GCGGGCCAGG TGGGCTTGGC GCTGGAAAAC
GCCCGCCTGT ACGCGTCCCT GCGCCAGTAC TACCTGAGCA CCCTGCAGGC GCTGGCAGCG
GCCCTGGAGG CCAAGGACAA GTATACGCGG GGGCACTCCG TGCGGGTGGC CCGGCTGGGG
CAGGCGTGTG CCCGGGCCCT GGGCTTAAGC GATGAGGAGC GGGAGCAGCT CTACCTAGCC
GCGCTCCTGC ACGACATAGG CAAAATCGGC ATACCCGAGA GCATTCTTTT AAAGCCCGGA
CCCCTTGAGC CGGCGGAGTG GGAGGAGGTT AGGAGCCACC CTGTGGTGGG AGAAAGGATC
GTGGAGCCGG CCGGGTTTCA TCCGCAGGTG GTTGCTGCCA TACGGCACCA CCACGAGGAC
TGGAGTGGGG GTGGCTACCC GGACGGCCTG GCCGGGGAGG AGATACCCCT CCTGGCGCGC
ATTATCAGCG CGGCTGACGC TTACGACGCC ATGACCTCCG ACAGGCCTTA CCGCCGCGCA
CGCACGGCCG AAGAAGCAAT CGAGGAGCTG CGCCGGGGAG CAGGGCGGCA GTTCGACCCG
CGTGTGGTGG ACGCGTTTCT GCGGATACCC GCTGCAGAAA TGGAAGAAAT TGGGGGGGGG
GGGGGGTGCC TTGATCACCC TTCTCACCGA AGTTTTGTGC AGTTTGGCAG TTTAAGGAAA
TGA
 
Protein sequence
MGQRVVDSVN SGRRTEKTEW GLGFLERIVD SLPDGVLAVD REGRAVVWNR AAEEMTGVRK 
EEVLGRGEYA YAVPFYGEPR PILVNILLGN GREWERKYEK IERKGQVLVG EGFAPYAYGG
RGLHFWTIAA PIYDEAGNLL GAVQCIRDIG ERKQMEDKLR HWSTHDALTG LYNRAFFEEE
LRRLEKGRSF PVSLILCDID DLKVVNDTLG HARGDELLRR AARVIASCVR GSDLVARVGG
DEFAAVLPQT DRAAAEEVAR RITQAAAEDN AGRPEFPLSI SVGTATAEDP GRPLVEAYKE
ADDAMYRDKL ARGAEPREAW KKADEMAFLY DFSRTVQETL EVSEVAQRAL EAVLKVTGAT
SGSVVMLSEE MPGALAAETA ATLEPGDEFR VVPAGEVVAA VERETRAVHF DSRPGAGTAA
ERRPAVAVPL MVEGKVTGVL TIAGRPEGAP FSEEEAAFLT TLGTGLGLTL QNARLYRQLQ
ARAAMLERLI ELGQALAGHL EESKVLEAAL AGVGEVLGAQ WYALCLLDEE TGELVLKASS
GMSAELQGRA ARVRPEGSLL GEVLRRGEPV AVDDTAAAGP GMQLPYYAPE MRAVAVAPVR
AGGKILGTLK VYSPVPRRWS EEEVGYLATV AGQVGLALEN ARLYASLRQY YLSTLQALAA
ALEAKDKYTR GHSVRVARLG QACARALGLS DEEREQLYLA ALLHDIGKIG IPESILLKPG
PLEPAEWEEV RSHPVVGERI VEPAGFHPQV VAAIRHHHED WSGGGYPDGL AGEEIPLLAR
IISAADAYDA MTSDRPYRRA RTAEEAIEEL RRGAGRQFDP RVVDAFLRIP AAEMEEIGGG
GGCLDHPSHR SFVQFGSLRK