Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daud_0538 |
Symbol | |
ID | 6026415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Desulforudis audaxviator MP104C |
Kingdom | Bacteria |
Replicon accession | NC_010424 |
Strand | + |
Start bp | 575328 |
End bp | 577910 |
Gene Length | 2583 bp |
Protein Length | 860 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641593374 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001716711 |
Protein GI | 169830729 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2206] HD-GYP domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.883741 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGGGCAAC GGGTGGTGGA TAGCGTGAAC TCAGGACGGC GAACGGAAAA GACAGAGTGG GGACTGGGCT TTCTCGAGAG GATCGTCGAC TCCCTCCCGG ATGGCGTCCT TGCCGTCGAC CGCGAAGGCA GGGCGGTCGT GTGGAACCGG GCCGCGGAAG AAATGACGGG AGTCAGGAAG GAAGAAGTGC TGGGCAGGGG CGAATACGCC TATGCCGTCC CGTTTTACGG GGAACCCAGG CCCATCCTCG TAAACATCCT GCTGGGCAAC GGTAGGGAGT GGGAGCGGAA GTACGAGAAA ATCGAGCGGA AGGGCCAGGT TCTTGTCGGC GAAGGTTTTG CCCCTTACGC TTACGGCGGC AGAGGCCTTC ATTTCTGGAC CATTGCGGCG CCAATCTATG ATGAAGCGGG AAACTTGCTC GGGGCGGTCC AGTGCATCCG CGACATCGGC GAGCGCAAGC AGATGGAGGA TAAACTGAGG CACTGGAGCA CCCATGACGC TCTCACCGGG CTTTACAACC GCGCCTTCTT CGAGGAGGAA CTGCGGCGGC TGGAGAAAGG TCGCTCCTTT CCTGTAAGTC TCATCCTCTG CGACATCGAC GACCTGAAGG TGGTTAACGA CACCTTGGGC CACGCGCGGG GCGACGAGCT CTTACGCCGC GCCGCCAGGG TGATCGCCAG CTGCGTCCGG GGGTCCGACC TGGTGGCCCG GGTCGGCGGA GATGAATTTG CCGCGGTGCT GCCGCAAACG GACCGGGCGG CGGCGGAGGA AGTGGCGCGG CGCATAACCC AGGCCGCGGC GGAGGATAAT GCGGGGCGCC CCGAGTTCCC CCTGAGCATT TCGGTGGGCA CGGCCACGGC CGAAGATCCG GGGCGTCCGC TGGTCGAGGC ATACAAAGAG GCCGACGACG CCATGTACAG GGACAAGCTG GCCCGGGGGG CGGAGCCGCG AGAGGCCTGG AAGAAAGCGG ACGAAATGGC CTTTCTCTAC GACTTCTCCC GAACGGTACA AGAAACCCTC GAGGTAAGCG AGGTGGCGCA GCGGGCCCTG GAGGCGGTGC TGAAGGTGAC CGGCGCCACC AGCGGGTCCG TGGTGATGCT GAGCGAGGAG ATGCCGGGGG CCCTGGCTGC CGAGACGGCG GCGACCCTGG AGCCCGGCGA CGAGTTCCGG GTCGTGCCGG CCGGCGAAGT CGTTGCCGCC GTCGAGCGGG AAACGCGCGC CGTGCACTTC GACAGCCGCC CCGGAGCCGG TACGGCCGCA GAAAGGCGGC CGGCGGTAGC CGTGCCCCTC ATGGTAGAGG GCAAGGTGAC GGGCGTGCTG ACCATCGCGG GCCGGCCGGA AGGCGCGCCC TTCAGCGAGG AGGAGGCCGC TTTCTTGACC ACCCTGGGCA CCGGCCTGGG GCTGACGCTG CAAAACGCCC GCCTTTATCG TCAACTCCAG GCGAGGGCGG CCATGCTGGA ACGCCTGATC GAGCTGGGAC AGGCGCTGGC CGGCCACCTC GAGGAGAGCA AGGTGCTCGA AGCAGCTCTG GCTGGTGTAG GGGAGGTCCT TGGCGCGCAG TGGTATGCGC TGTGCCTGCT TGATGAGGAG ACGGGCGAAC TGGTGCTCAA GGCCAGCTCG GGCATGAGCG CGGAGCTGCA GGGAAGAGCG GCCCGTGTCC GGCCGGAGGG CAGCCTGCTG GGCGAAGTGC TCCGGAGAGG GGAGCCGGTG GCGGTGGACG ATACGGCCGC CGCCGGGCCC GGCATGCAGC TGCCCTATTA TGCGCCCGAG ATGCGGGCGG TGGCTGTGGC GCCGGTAAGA GCGGGGGGCA AGATTCTGGG CACCCTGAAG GTGTACTCTC CAGTACCGCG ACGCTGGTCA GAAGAAGAAG TTGGGTATCT GGCCACCGTG GCGGGCCAGG TGGGCTTGGC GCTGGAAAAC GCCCGCCTGT ACGCGTCCCT GCGCCAGTAC TACCTGAGCA CCCTGCAGGC GCTGGCAGCG GCCCTGGAGG CCAAGGACAA GTATACGCGG GGGCACTCCG TGCGGGTGGC CCGGCTGGGG CAGGCGTGTG CCCGGGCCCT GGGCTTAAGC GATGAGGAGC GGGAGCAGCT CTACCTAGCC GCGCTCCTGC ACGACATAGG CAAAATCGGC ATACCCGAGA GCATTCTTTT AAAGCCCGGA CCCCTTGAGC CGGCGGAGTG GGAGGAGGTT AGGAGCCACC CTGTGGTGGG AGAAAGGATC GTGGAGCCGG CCGGGTTTCA TCCGCAGGTG GTTGCTGCCA TACGGCACCA CCACGAGGAC TGGAGTGGGG GTGGCTACCC GGACGGCCTG GCCGGGGAGG AGATACCCCT CCTGGCGCGC ATTATCAGCG CGGCTGACGC TTACGACGCC ATGACCTCCG ACAGGCCTTA CCGCCGCGCA CGCACGGCCG AAGAAGCAAT CGAGGAGCTG CGCCGGGGAG CAGGGCGGCA GTTCGACCCG CGTGTGGTGG ACGCGTTTCT GCGGATACCC GCTGCAGAAA TGGAAGAAAT TGGGGGGGGG GGGGGGTGCC TTGATCACCC TTCTCACCGA AGTTTTGTGC AGTTTGGCAG TTTAAGGAAA TGA
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Protein sequence | MGQRVVDSVN SGRRTEKTEW GLGFLERIVD SLPDGVLAVD REGRAVVWNR AAEEMTGVRK EEVLGRGEYA YAVPFYGEPR PILVNILLGN GREWERKYEK IERKGQVLVG EGFAPYAYGG RGLHFWTIAA PIYDEAGNLL GAVQCIRDIG ERKQMEDKLR HWSTHDALTG LYNRAFFEEE LRRLEKGRSF PVSLILCDID DLKVVNDTLG HARGDELLRR AARVIASCVR GSDLVARVGG DEFAAVLPQT DRAAAEEVAR RITQAAAEDN AGRPEFPLSI SVGTATAEDP GRPLVEAYKE ADDAMYRDKL ARGAEPREAW KKADEMAFLY DFSRTVQETL EVSEVAQRAL EAVLKVTGAT SGSVVMLSEE MPGALAAETA ATLEPGDEFR VVPAGEVVAA VERETRAVHF DSRPGAGTAA ERRPAVAVPL MVEGKVTGVL TIAGRPEGAP FSEEEAAFLT TLGTGLGLTL QNARLYRQLQ ARAAMLERLI ELGQALAGHL EESKVLEAAL AGVGEVLGAQ WYALCLLDEE TGELVLKASS GMSAELQGRA ARVRPEGSLL GEVLRRGEPV AVDDTAAAGP GMQLPYYAPE MRAVAVAPVR AGGKILGTLK VYSPVPRRWS EEEVGYLATV AGQVGLALEN ARLYASLRQY YLSTLQALAA ALEAKDKYTR GHSVRVARLG QACARALGLS DEEREQLYLA ALLHDIGKIG IPESILLKPG PLEPAEWEEV RSHPVVGERI VEPAGFHPQV VAAIRHHHED WSGGGYPDGL AGEEIPLLAR IISAADAYDA MTSDRPYRRA RTAEEAIEEL RRGAGRQFDP RVVDAFLRIP AAEMEEIGGG GGCLDHPSHR SFVQFGSLRK
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