| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0413 |
|---|
| Symbol | |
|---|
| ID | 6026436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 454167 |
|---|
| End bp | 455624 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641593255 |
|---|
| Product | hydrogenase large subunit |
|---|
| Protein accession | YP_001716593 |
|---|
| Protein GI | 169830611 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0146308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCAG TATCAGAAAT AACCAAGTTG CGGCGGAATA TTCTTACCCG AGTTGCTCGT
TGGGCTCTTA ATAAACCACT GGATGAGCAA CCGACCGACG AGGTTATAAG GAATATGGTT
ATGGAAATGA TTCCCGATGG GCCGGCCCGC TATCGTTGCT GCATTTATAA AGAAAGGGCC
GTCGCAGAGG CCCAGATTCG CATTATAACG GGGCTGGAGG CATCAGAGCA AGTTGTGACG
GTTATTCCCG AGGCCTGCAA TGGTTGTTCG TTAAATAAAT ACTTTGTTAC CGATGCCTGT
CAAAACTGCG TTGCCCACTC TTGTCGTAAC AGTTGTCCCA AAAAAGCCAT TTCAGTACTT
CAAAACCGGG CATATATAGA TAACGATTCT TGTGTGGAAT GTGGTATCTG TGCTAAAAAC
TGTCCATATT ACGCTATTGT AGAAATTTCT CGTCCTTGTG AGCGTTCCTG TGACATGGGC
GCTATCAAGG TTGATGAATG CCGACGAGCA GTTATAGATC TGGATAAATG TGTTTCCTGC
GGTATGTGTG TTGCTGTATG CCCCTTTGGC GCCATCACGG ACACTTCGAA AATACTAGAT
GTAGCTAAAG CTCTGAGGGT TAAAAAGCAA CCCATGGTGG CCATTGTAGC TCCGTCCCTT
CCCGGACAGT TTGGCCCAAA GGCTACTCCG GGTCACATAA AAACCGCAAT TTTGAAGCTT
GGCTTTGATG GCGTTGTGGA GGCAGCATTG GGAGCGGACG TGGTGGCCAA ACAGGAGGCG
GAAGAAATAA GAAACCACCC TGAAAGTAAA TTGATGACCA ATTCTTGTTG CCCCGCCTGG
GCCAAAGCTG TAACCATTAA ACTACCTGAG ATAGCAGGAA AGATTTCCGA CACTCTCTCT
CCAATGAGAG TTACCGGTCG GTTAGTTAAA GAACGGTACG CTAACAAAGT TACTACAGTA
TTTATCGGCC CATGTATTGC AAAAAAGGCC GAAGCAACAT TGGGCGGTGA AATTGACATG
GCTTTAACCT TTGAAGAGCT GTCTGCGTTA TTTGCAGCAT CGGACATTGA TCCGGCCAAT
CATGTTCCTG CTGACATGAA CGATGCTTCG CCTTACGGTC GGCTGTTTGC AAAGGCCGGA
GGAGTCAGTG CTGCGGTTAC CCGGCACTTG CCTGACGTTT CTATGGAAGT GTTACAAGTA
CAGGGAATAG AACAAGGCCT GGCTGCCCTT AGATCGGCAG CAAATGCCCT AAAAGGCACA
AGGACAGCCG ACAGCGATAA ATTTACCTTC ATTGAGTGTA TGGCCTGCGA AGGCGGTTGC
GTAGGCGGGC CGGGTACATT GGTTAGAAGT AACGTAGCAG CCAGAGCAGT AGAAGCATTT
TCTAATTTGG CCAATACTGG TACGAGAAAC AACGCCCTGG GGATATTCGA GGATCGAAGC
GCAGGAAAAA GTCCTTGA
|
|---|
| Protein sequence | MNPVSEITKL RRNILTRVAR WALNKPLDEQ PTDEVIRNMV MEMIPDGPAR YRCCIYKERA
VAEAQIRIIT GLEASEQVVT VIPEACNGCS LNKYFVTDAC QNCVAHSCRN SCPKKAISVL
QNRAYIDNDS CVECGICAKN CPYYAIVEIS RPCERSCDMG AIKVDECRRA VIDLDKCVSC
GMCVAVCPFG AITDTSKILD VAKALRVKKQ PMVAIVAPSL PGQFGPKATP GHIKTAILKL
GFDGVVEAAL GADVVAKQEA EEIRNHPESK LMTNSCCPAW AKAVTIKLPE IAGKISDTLS
PMRVTGRLVK ERYANKVTTV FIGPCIAKKA EATLGGEIDM ALTFEELSAL FAASDIDPAN
HVPADMNDAS PYGRLFAKAG GVSAAVTRHL PDVSMEVLQV QGIEQGLAAL RSAANALKGT
RTADSDKFTF IECMACEGGC VGGPGTLVRS NVAARAVEAF SNLANTGTRN NALGIFEDRS
AGKSP
|
|---|
| |