| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0072 |
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| Symbol | |
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| ID | 6027497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | + |
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| Start bp | 74214 |
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| End bp | 77744 |
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| Gene Length | 3531 bp |
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| Protein Length | 1176 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641592925 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001716272 |
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| Protein GI | 169830290 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0902915 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGGGT TAACAGAATT CCTAAGGGAG ACCCCCGCCC TGAAAACCGC GGTCTCGGGT
CTGGCGCGTT ATAAACGCCA GCACGTGCTC GGGGTCGGTG GGGGCCATCA GGCGCTGGTA
TGTGCGGCTC TGGCCCGTGA TCCAGCACCA CTTTTGATCA TCACCCCCGG CGAGCGGGAG
GCGGCCGCCC TGGCGGACGA CCTGGTCACC CTGCTCCCGG GCCGGGGGAT TTTCGTGTTT
TCAGCTTGGG AACTACTACC AGTGCAGGTG CTTGCTTACA GCCGGGAGAT CGGGGTGCGC
CGGATGCGGG TGCTGGAGGC ATTGATCACC GGTACCAACC CGGTCGTAAT CGCGCCGGTG
GACGCCCTGG CACGCCTCCT GCCGCCGTCC GGCGTGCTCC GCGAGCGGAT ATTTGTTCTG
GAGGGCGGTC AGTCCTGGAC GATGGGCGCA CTGCGGGGCC GGCTTTTGTC CATGGGCTAT
GAGGCGGTGT CCCAGGTCGA CACGGCCGGA CAGTTCAGTA TCCGCGGGGG GATTGCCGAC
CTTTTCCCCT ACACGGCCCG CTATCCGATA CGGGTTGAGT TTTTCGGGGA CGAAATCGCC
TCCCTGCGCA CTTTCGACCC GGAAACCCAG CGCTCCCGCG CCGCCACCGA TCGGGTGACC
GTGGCGCCGG CAACGGAGTT GGTGGTGGAG GACGACGCCT GGGAAGCGGG GATCGAGACC
CTGACACGTG AGTACCGGGA GCAACTGGAC CGGCTGGAAA AGCAGGGCGA CACCGAAGGA
GCGCGCCGGC TCCGGGAATG GGTGGAGGAA ATCCTGCCGC ATCTGGACGC CAGGAGCCAC
ACCCCGGGCA TTGAGGACCT GCTGGCCTAT TTTTACCCGC AAGCGGCAAC CCTGATGGAT
TACCTCGGCC CCGCCGGGGT TGTGGCGGTG ACCGAACCGG ACCGGGTCGC CGAGGTGGCG
GAGAGTTTCG CGCAGCACCG TGCCCACGGC TACGCCGTTC TACTGGAGCA GGGGCGGTTG
TTGCCCGGCC AGTTCCGGTT GTACCTGGAC CGGGAGCAGT TGTTTGCGGC GCTGGCCCCT
TTCCGGACCG TATACCTTTC GTTGTTCGGC CGGGTCGGGG CTTTCTCCCG CTCGGATCGG
GAAATCCGGT TCGAGGTGCG GGAATTGCCC GGAAATCTGG GCCGCACCGG GGCTGTCCTT
GGTGAAATCC GCCGGCGGCA GGTTGCCGGG CAGCGGGTGG TCCTTCTGGT AGGTACCGGC
GAGCGTGCCC GGCGTTTATT AAACAGCCTG CGCCAAAGCG GGCTGGCCGC GTTTCAGGCC
TATGAACTGG GCCAGGTACA GCCCGGTCAG GTAGCCGTGG GCGTCGGGCG CCTAAACAAA
GGCTTCGAGA TCGCCGAAAG TCAACTGGCC GTCCTGACCG AAAGGGAAAT CTACGGCAAG
CAACTCCAGG ACCGGCGGGA ACCATACCGG CTGCGGCGGC GGACCCTGGA TGAACTGAAT
TTGGCCCCCG GCGATTTCGT GGTGCACGTC AATCACGGCA TCGGCCGCTA TCACGGGATT
GTGCTCCTGG AGATCGGAGA AGTGAAGCGG GAGTACCTCC TGATAAACTA CCTGGGGGAG
GACAAGCTTT ACGTCCCGAC CGACCAACTA GGTCTGGTGC AGAAATACAT CGGCGCAGAG
GGGGAAACGC CCCGGTGCTC AAGGCTGGGA GGCAGCGAAT GGGCCCGGTC CAAGAAACGG
GTGCGCGAGG CGGTCCGGGA AATGGCCCAG GAGTTGTTGA AGCTCTACGC CGCCCGGCAG
TCCTTGCCGG GTTACCGCTT CCCGGCCGAT AACCCCTGGC AGCGGGAATT CGAACTGGCC
TTCCCCTTCG AGGAAACCCC GGACCAGTTG AAGGCCATCA TGCAGGTCAA AAAGGATATG
GAGCGTCCCC GCCCGATGGA CCGACTGCTC TGCGGCGATG TCGGGTACGG CAAGACGGAA
GTGGCCATGC GGGCCGTCTT CAAGGCGGTG ACGGACGGTA AACAAGCCGC CGTGCTGGTG
CCGACCACGG TGCTTGCCCA GCAGCACTTG CAGACCTTCC GGGAACGTTT CAACGGGTAC
CCGGTGGTGA TCGAGATGTT GAGCCGATTC CGGTCGGTCC GGGAGCAAAA GCAGGTTCTG
GCCGACCTGG CCGCGGGCAA GGTGGACATC GTGATCGGCA CCCACCGGCT GGTGCAGGAC
GACGTGCAGT TCGCCGATCT GGGGCTGATC GTGGTCGACG AAGAGCAGCG CTTCGGCGTG
CTGCACAAGG AAAAACTGAA ATTGAGACAC CCGAACGTCG ACGTAATCAC CCTGACGGCG
ACCCCCATCC CCAGGACCCT GTACATGTCC CTGGTGGGGA TTCGCGACAC CAGCCTCCTG
GAAACGCCGC CCCTGGACCG CTTTCCGGTT CAGACCTTTG TGGTCGAGGA GGACCCGGTG
CTGATCCGGG AGGCGGTGGG CCGGGAGTTG GCCCGGGGCG GCCAGGTGTA TTTCGTGCAC
AACCGCGTTT TTGAACTGGA CCGGGTTGCC GGCTGGTTGC AGGAACTGGT TCCCGAGGCG
CGGATTGCGG TGGCGCACGG CCAGATGCGG GAAGACCAGC TGGAACAAGT GATGCTGGAT
TTCGTGGCCG GCGCTTACGA CGTCCTGGTC TGCACCACGA TTATCGAAAC CGGCCTGGAC
ATCACCAATG TAAATACTCT GGTCGTAAAA GAAGCGGACC AACTGGGCCT GGCCCAACTG
TACCAGCTCC GGGGGCGGGT GGGCCGTTCA AACCGCCTGG CCTACGCCTA TTTCACCTTC
CGGCGGGACC GGCTGCTGGG GGAAGCGGCC GAGAAGCGGC TGCGGGCGAT CCGGGATTTC
ACCGACTTCG GTTCCGGTTT CCGGCTGGCG AAGCGGGACC TGGAAATCCG GGGCGCCGGG
AACCTGTTGG GCACCGAGCA GCACGGGAAT ATTTCCGTGG TTGGTTTTGA GATGTACTGC
CGGCTGCTGG AAGAAAGCGT GCGGGAACTG AAAGGCGAGG CGCCGCCGGA GGAATTCGAA
ACGGTGGTCG AGGTGCCGGT GACTGCGTTC CTGCCCGATG ACTACATCCC CGATCCCGAG
CAAAAAGTGC AGTTTTACCA CCTGCTGGCC CGCGTGCAGC AGGTGGAAGA CGTTGACCAC
GTTGCGGAGG AGTTGCGGGA CCGGTTCGGC AGCCCGCCGG CTCCGGTGGA GAACTTGCTG
GCCATCGCCC GGATCCGGGC GATGGCCAAG GGTTTCAGGA TCAAAAGCAT CAACGGTCAG
GGACGCTCCT GCCGGTTTAT CCTGGGGGAG GCCCACCCGC TGGACGGGAG CACTCTGGTA
GCCGTTTCCG AGCACTATCC GGGGCGGCTC CGCTTTAAGG AAGAAGAGAG CGGTTTTGAA
ATTTGGCTGA AGTTGGAATC ACCGGGAGAT GGTCCGCGCG TGATCCGTGA AATTGAGAGT
TTTCTTGCCA AAATTAGTCA GAAGCCGCAA GCCCAGATTT CTCAAGGCTG A
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| Protein sequence | MQGLTEFLRE TPALKTAVSG LARYKRQHVL GVGGGHQALV CAALARDPAP LLIITPGERE
AAALADDLVT LLPGRGIFVF SAWELLPVQV LAYSREIGVR RMRVLEALIT GTNPVVIAPV
DALARLLPPS GVLRERIFVL EGGQSWTMGA LRGRLLSMGY EAVSQVDTAG QFSIRGGIAD
LFPYTARYPI RVEFFGDEIA SLRTFDPETQ RSRAATDRVT VAPATELVVE DDAWEAGIET
LTREYREQLD RLEKQGDTEG ARRLREWVEE ILPHLDARSH TPGIEDLLAY FYPQAATLMD
YLGPAGVVAV TEPDRVAEVA ESFAQHRAHG YAVLLEQGRL LPGQFRLYLD REQLFAALAP
FRTVYLSLFG RVGAFSRSDR EIRFEVRELP GNLGRTGAVL GEIRRRQVAG QRVVLLVGTG
ERARRLLNSL RQSGLAAFQA YELGQVQPGQ VAVGVGRLNK GFEIAESQLA VLTEREIYGK
QLQDRREPYR LRRRTLDELN LAPGDFVVHV NHGIGRYHGI VLLEIGEVKR EYLLINYLGE
DKLYVPTDQL GLVQKYIGAE GETPRCSRLG GSEWARSKKR VREAVREMAQ ELLKLYAARQ
SLPGYRFPAD NPWQREFELA FPFEETPDQL KAIMQVKKDM ERPRPMDRLL CGDVGYGKTE
VAMRAVFKAV TDGKQAAVLV PTTVLAQQHL QTFRERFNGY PVVIEMLSRF RSVREQKQVL
ADLAAGKVDI VIGTHRLVQD DVQFADLGLI VVDEEQRFGV LHKEKLKLRH PNVDVITLTA
TPIPRTLYMS LVGIRDTSLL ETPPLDRFPV QTFVVEEDPV LIREAVGREL ARGGQVYFVH
NRVFELDRVA GWLQELVPEA RIAVAHGQMR EDQLEQVMLD FVAGAYDVLV CTTIIETGLD
ITNVNTLVVK EADQLGLAQL YQLRGRVGRS NRLAYAYFTF RRDRLLGEAA EKRLRAIRDF
TDFGSGFRLA KRDLEIRGAG NLLGTEQHGN ISVVGFEMYC RLLEESVREL KGEAPPEEFE
TVVEVPVTAF LPDDYIPDPE QKVQFYHLLA RVQQVEDVDH VAEELRDRFG SPPAPVENLL
AIARIRAMAK GFRIKSINGQ GRSCRFILGE AHPLDGSTLV AVSEHYPGRL RFKEEESGFE
IWLKLESPGD GPRVIREIES FLAKISQKPQ AQISQG
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