| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3996 |
|---|
| Symbol | |
|---|
| ID | 3567285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 4294313 |
|---|
| End bp | 4296307 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637682469 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_287193 |
|---|
| Protein GI | 71909606 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCCTG AACTCGGCCA TTTCGCCCTG ATCCTTGCCG CACTGGTTGC CCTGATCCTC
GGCACCCTGC CGCTAGTCGG CGCCCACCAG AACCGCCTGG CCTGGGTTGC CATCGCCCGC
CCCGCCGCTT CGGCGATGGC GCTGCTGCTC ACCTTCTCTT TTGCCTGCCT GGTGCAGGCT
TTCGTGACCA ACGATTTCTC CGTGGTTTAT GTCGCGCAAC ACTCCAATTC GTTGCTGCCC
ATTCAGTACC GCGTTGCCGC CGTCTGGGGC GGCCATGAGG GCTCGCTGCT ACTTTGGATG
CTGTTCCTGA CCTGGTGGGC CTTCAGCGTC GCCATGCTGT CCAAGCAACT GCCGGAAACG
ATGGTTGCCC GCGTGCTCGG AACCCTTGGG CTGGTCGCCT TCGGCTTCAT GCTCTTCATC
CTGATCACCT CCAATCCATT TGAGCGCCTG CTTCCAGCCG CCGCCGAAGG GCGCGACTTG
AACCCGCTGC TACAGGACCC GGGACTCGTC ATCCATCCGC CCATGCTCTA CATGGGTTAC
GTCGGTTTCT CGGTCGCCTT CGCCTTTGCC ATTGCAGCCC TGCTTTCTGG CCAGTTGGAT
GCCGCCTGGG CACGCTGGTC GCGGCCATGG ACCATGGCTG CCTGGTGCTT CCTGACCATG
GGCATCGCCC TCGGCTCGTG GTGGGCCTAT TACGAACTGG GCTGGGGCGG CTGGTGGTTC
TGGGATCCGG TTGAAAACGC CTCGTTCATG CCCTGGCTGG TCGGCACGGC GCTGATCCAC
TCATTGGCGG TCACCGAAAA GCGCGGCAGT TTCAAGAACT GGACGGTTCT GCTGGCCATC
TCTGCCTTCT CGCTGTCGCT GCTCGGCACC TTCCTGGTCC GTTCCGGCGT ACTGACCTCG
GTTCATGCCT TCGCCACCGA TCCACGGCGC GGTATCTTCA TCCTGATTTT CCTGGTCGCC
GTCATCGGTA GCTCGCTGGC ACTGTTCGCC TGGCGGGCGC CGAAGGTTGG CCTGGGTGGC
CGTTTTGGGC TGATTTCTCG CGAGTCGCTG CTGCTAACCA ATAACGTACT GCTCGTCGTC
GCCTGCGCCA CCGTGCTCCT CGGCACGCTC TACCCACTGC TGATCGACGC CCTCGGCATC
GGCAAGATTT CGGTCGGGCC ACCGTACTTC AACGCGGTTT TCGTTCCCGT CATGGCTCCG
GTTCTGTTTC TGATGGGCAT TGCTCCCTTC GCCCGCTGGA AGGAAGCGTC GATTCCGGAC
ATCACCCGAA TCGTGCGCTG GGCGATGGTC GCCGCTGCGG TAGTCGCTAT CGCCCTGCCG
CTGATTTACG GCCACTGGAG CACGCTGATC GCACTGGGCA TCCTGCTCGC CGCCTGGGTC
GCGATCACGA CGGTGATTAC CTTCGTCGAG CGTGTCCAGC ACACGCGTGC CGGCCAGTCC
TTCCTGAGTA CCGCCGTCAA GCAGCCGCGC AGCTTCGTCG GCATGTGCCT GGCGCACTTT
GGCATCGCCG TTTTCGTGGT TGGCGTGACC ATGGTCAATA GCTTCCAGGA CGAAAAGGAC
ATCAAGATGG CGCCGGGTGA AACAACCACG GTTGCCGGCT ACAGTTTCAC TTTCAACGGC
GTCAAATCCG TGCAGGGGCC AAACTACACG GCCGCTCAGG GTGATTTCGA CCTTGCGGTC
GACGGCAAAT TCATGCGCAA AATGAACCCG GAAAAGCGCA ACTACGCGTC CTCCGGCATG
CCGATGACCG AAGCCGCCAT CGACGCTGGT TTCCTGCGCG ATGTCTATGT CTCGCTCGGT
GAGCCAATCG ACCGTGACAA GCCGGAAGCC GAGTGGGCGG TGCGCGTCTA TTACAAGCCC
TTCGTTGACT GGATCTGGGG TGGCTGCTTC CTGATGGCAC TGGGCGGCCT GCTCGCTCTG
CTCGACCGCC GCTATCGCGT CAAATCCCGC GTCTCAGCCA CTGTCAAAAT CCCTGCCGGA
ACACAACAAG CATGA
|
|---|
| Protein sequence | MIPELGHFAL ILAALVALIL GTLPLVGAHQ NRLAWVAIAR PAASAMALLL TFSFACLVQA
FVTNDFSVVY VAQHSNSLLP IQYRVAAVWG GHEGSLLLWM LFLTWWAFSV AMLSKQLPET
MVARVLGTLG LVAFGFMLFI LITSNPFERL LPAAAEGRDL NPLLQDPGLV IHPPMLYMGY
VGFSVAFAFA IAALLSGQLD AAWARWSRPW TMAAWCFLTM GIALGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALIH SLAVTEKRGS FKNWTVLLAI SAFSLSLLGT FLVRSGVLTS
VHAFATDPRR GIFILIFLVA VIGSSLALFA WRAPKVGLGG RFGLISRESL LLTNNVLLVV
ACATVLLGTL YPLLIDALGI GKISVGPPYF NAVFVPVMAP VLFLMGIAPF ARWKEASIPD
ITRIVRWAMV AAAVVAIALP LIYGHWSTLI ALGILLAAWV AITTVITFVE RVQHTRAGQS
FLSTAVKQPR SFVGMCLAHF GIAVFVVGVT MVNSFQDEKD IKMAPGETTT VAGYSFTFNG
VKSVQGPNYT AAQGDFDLAV DGKFMRKMNP EKRNYASSGM PMTEAAIDAG FLRDVYVSLG
EPIDRDKPEA EWAVRVYYKP FVDWIWGGCF LMALGGLLAL LDRRYRVKSR VSATVKIPAG
TQQA
|
|---|
| |