Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3926 |
Symbol | |
ID | 3567657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 4221189 |
End bp | 4222514 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637682400 |
Product | Type I secretion outer membrane protein, TolC |
Protein accession | YP_287124 |
Protein GI | 71909537 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 58 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAC TCGCTTGGCT GATCGTTTCG CCGCTGCTCG CCTCCCCACT CTTTGCCGCC GACCTGATGC AGGTTTATCG CGACGCGCAG GACAACGATC CGACCTTTGC CACCGCCCGG GCAACGCTCG ATGCCGGACG TGAAAAGTCG CCACAGGCAC GCGCCGGGTT ATTACCCAGC CTGACCTTGT CCGGCAACAC CGTGTGGAAC GAGAATGAAC TCTCGGCCCA CAACGGACCG ACCATCGCCA AGCCGCACTA CAACTCCAAC GGTTACCAAC TGACGCTCAG CCAGCCGCTG TTCCGCTGGC AAAACTGGGT TTCCTACGAC CAATCGAAGC TGCAGGTTGC CCAGGCTGAA GCCAATTTCG TTCAGGCCCG ACAAGACCTG ATCCTGCGTG TCTCACAAGC CTATTTCGAC GTGGTTTATG CCGTCGAAAA CCTGAAGGCA GTTGGCGCCA ACAAGGCCGC CATTGCCCAG CAACTCGAGT CAGCCAAGAA GAATTTCGAA GTCGGCACCG CGACCATCAC CGATACGCAC GAGGCACAAG CCCGTTACGA TCTGGCGATC GCTCAGGAAA TTGCCGCCGA AAGCGATTAT GAAATCCGCC AACGCGCCTT GCAGGCCATC ATCGGCAAAG AGCCGGGGCC ACTGGCGACG ACGCGCAAGG ATGCCGAGCT ATCGCCGCCG CAGCCAAACG ACATGAAACA GTGGGTGGCA GCCGCCGAAA AGGACAGCAT CACGGTTCAG GTGCAACAGG CCAATGCCGA CATCGCAGCC CGTGAAGTCG ACAAACAACG GGCTGGACAC TATCCGACCG TAGACCTGGT CGCCAACCAG GGCTATTCAA AGAACTACGC CTCGACTTTC GGCGTCTATG ACACCGATTT CAAGAACGTC GGCGTTCAAG TCAATATTCC GCTGTTTCAG GGCGGCCTGA CCGTTTCGCG TCAACGTGAA GCGGCCGCCA ATCGTGGCGC GGCGCAATCC GCACTCGAAA CGGCTCGCCG CGGTGCCGCA TTGTCTGCGC AGCAATACTA TCTCGGCGTA AGCAATGGGC TGGCCCAGGT CAGAGCCCTG AAAGCCGCGT TAATCTCATC ACAATCAGCA CTGGAATCGA ACAAGCTGGG CTACGAAGTC GGCGTTCGCA TCAACATCGA CGTGCTGAAC GCCGAAAACC AGGTCTACGT CACGCGACGC GATCTGGCCA AAGCCACACT GGATACGCTG ATGTCGCAAC TGCGTCTGAA GGCAGCAACC GGCTCATTGG GCGAAGATGA TGTCGCCCAG ATCAACGCCC TGCTCGACCC GTCCACCGCT CAATAA
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Protein sequence | MKKLAWLIVS PLLASPLFAA DLMQVYRDAQ DNDPTFATAR ATLDAGREKS PQARAGLLPS LTLSGNTVWN ENELSAHNGP TIAKPHYNSN GYQLTLSQPL FRWQNWVSYD QSKLQVAQAE ANFVQARQDL ILRVSQAYFD VVYAVENLKA VGANKAAIAQ QLESAKKNFE VGTATITDTH EAQARYDLAI AQEIAAESDY EIRQRALQAI IGKEPGPLAT TRKDAELSPP QPNDMKQWVA AAEKDSITVQ VQQANADIAA REVDKQRAGH YPTVDLVANQ GYSKNYASTF GVYDTDFKNV GVQVNIPLFQ GGLTVSRQRE AAANRGAAQS ALETARRGAA LSAQQYYLGV SNGLAQVRAL KAALISSQSA LESNKLGYEV GVRINIDVLN AENQVYVTRR DLAKATLDTL MSQLRLKAAT GSLGEDDVAQ INALLDPSTA Q
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