| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3626 |
|---|
| Symbol | |
|---|
| ID | 3567992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 3899298 |
|---|
| End bp | 3901370 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637682099 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_286825 |
|---|
| Protein GI | 71909238 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 0.560894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.611761 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGCA ACCAGACCGA AATCACCTTC CGCCGCGAAC TGGCCAACGC CGTCCGCTTT
CTGGCCATCG ATGCCGTCAA TCAGGCCAAG TCCGGACACC CTGGCGCGCC GATGGGCATG
GCCGACATCG CCGAAGTGCT GTGGCGTGAC CATCTCAAGC ACAATCCAGC CAACCCGCAG
TGGGCGGACC GCGACCGCTT CGTACTGTCG AACGGTCACG GCTCGATGCT GCTCTACGCG
CTGCTTCACC TGACCGGCTA CGACCTCAAT ATCGATGACC TCAAGAACTT CCGCCAGTTC
GGCAGCCGCA CCGCCGGCCA TCCGGAAGTC GGCCACACGC CCGGCGTCGA GACGACCACC
GGGCCGCTCG GCCAGGGCCT GACCAACGCC GTCGGCATGG CGCTGGCCGA AAAGCTGCTG
GCCCAGCGCT ACAACCGGCC AGGTTGCGAG ATCGTCGATC ACCGGACTTG GGTTTTCGTC
GGTGACGGCT GTCTGATGGA AGGCATCAGC CACGAAGCCT GTTCGCTGGC CGGCGTCTGG
GGCCTCGACA AGCTGACCTG CTTCTACGAC GACAACGGGA TTTCCATCGA CGGCCACGTC
AAAGGCTGGT TCCGCGACGA CACCCCGGCC CGCTTCCGCG CCTACGGCTG GCATGTTGTC
GGGCCGATTG ACGGCCATGA CTCGGTGGCG CTGTCCGCGG CCATTGCCGA AGCCAAGGCC
GTCACCAGCC AACCGACCCT GATCGTCTGC CGCACGCAGA TCGGTTGGGG TTCGCCGAAC
AAGGCCGGTT CGCACGACGT TCATGGCGCG CCGCTCGGCG CCGATGAAAC GGCCGCCACC
CGTGCCGCGC TTGGCTGGTT GCATCCGCCG TTTGAAGTGC CGGACAGCCT GCGCGCCGCG
TGGAATGCCC AGTCTACTGG CGCCACTGCC GAAGCCTCAT GGCTGGCCAG GTTCGCCGCT
TACCGCACCG AGTATCCGGA ACTCGCCGCC GAATTCGAAC GCACGCAGGC CGGCGGTCTG
CCGGAAAAAT GGCCGGAAAT TAAAAGCGAA CTGCTGGCCA CGGCCGGCCG CAAGGAAGGC
GCCGTCGCCA CCCGCAAGTC GTCGCAGAAC TGCCTCGATT GGCTGGTCGA CCGCGTGCCC
GAACTACTTG GCGGCTCGGC CGACCTGACC GGCTCCAACC TGACCGCCGG CAAAGGCAGC
GTGGCCCTGC ATGAAGTACC CCAAGGGCAC TTCCTTCGGG GCGCTGGTGA GCGGCAGGCC
AACTACATTT CCTACGGCGT CCGCGAATTC GGCATGACGG CGATCATGAA CGGTGTCGCC
CTGCACGGCG GGTTGATTCC CTACGGCGGC ACCTTCGCCG TCTTCTCCGA CTACGCCCGC
AACGCGATCC GGATGAGCGC CCTGATGCAG CAGCGCGTCG TCCATGTCCT GACCCACGAT
TCCATCGGCC TCGGCGAGGA TGGCCCGACC CACCAGCCGG TCGAGCACGC CAGCAGCCTG
CGCATCATTC CCGGCCTCGA CCTGTGGCGC CCGTGCGACG AGCTGGAAAC AGCCATCGCC
TGGGGCGCCG CGCTCGAGCG CCAAAACGGA CCTTCCACCC TCTTTTTGTC GCGTCAAAAC
CTGCCGCAAT ACGGCGGCGC GGCGAGCCGG GCGGAAGGTG CCAGCCGCGG CGGCTACGTG
CTCTCCGAAG CCGACGGCCC GCTGCAGGCA GTGATCATCG CCACCGGCTC GGAAGTCGCC
ATCGCCATGC AGGCGCAGGC CATTCTGAAA ACCGGCGGCG TTGCAGTGCG TGTCGTCTCG
ATGCCCTGCA CGCGGCGCTT CGACCAGCAG CCTTCGACGT GGAAGAAGCT CGTGCTGCCG
CCGGAAGTCT GCCGCGTCGC CATCGAAGCC GGCCAGACCG ATTTCTGGCG AAAGTACGTT
GGCCTCGACG GCGACGTGCT CGGCCTCGAC GAATTCGGCG CCTCGGCCCC GGCCCCGGTG
CTTTACGAAC ACTACGGCCT GACCGCGGAC AACCTGGCGC AGACGGTGTT GCGCACCATC
GTCAGTGCCG GGGGCAGTGA TGGTGACTTC TGA
|
|---|
| Protein sequence | MDRNQTEITF RRELANAVRF LAIDAVNQAK SGHPGAPMGM ADIAEVLWRD HLKHNPANPQ
WADRDRFVLS NGHGSMLLYA LLHLTGYDLN IDDLKNFRQF GSRTAGHPEV GHTPGVETTT
GPLGQGLTNA VGMALAEKLL AQRYNRPGCE IVDHRTWVFV GDGCLMEGIS HEACSLAGVW
GLDKLTCFYD DNGISIDGHV KGWFRDDTPA RFRAYGWHVV GPIDGHDSVA LSAAIAEAKA
VTSQPTLIVC RTQIGWGSPN KAGSHDVHGA PLGADETAAT RAALGWLHPP FEVPDSLRAA
WNAQSTGATA EASWLARFAA YRTEYPELAA EFERTQAGGL PEKWPEIKSE LLATAGRKEG
AVATRKSSQN CLDWLVDRVP ELLGGSADLT GSNLTAGKGS VALHEVPQGH FLRGAGERQA
NYISYGVREF GMTAIMNGVA LHGGLIPYGG TFAVFSDYAR NAIRMSALMQ QRVVHVLTHD
SIGLGEDGPT HQPVEHASSL RIIPGLDLWR PCDELETAIA WGAALERQNG PSTLFLSRQN
LPQYGGAASR AEGASRGGYV LSEADGPLQA VIIATGSEVA IAMQAQAILK TGGVAVRVVS
MPCTRRFDQQ PSTWKKLVLP PEVCRVAIEA GQTDFWRKYV GLDGDVLGLD EFGASAPAPV
LYEHYGLTAD NLAQTVLRTI VSAGGSDGDF
|
|---|
| |