| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3623 |
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| Symbol | |
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| ID | 3567989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3895198 |
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| End bp | 3896949 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637682096 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_286822 |
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| Protein GI | 71909235 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 49 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0877329 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCGG TTGGGTTTTT GCATACAGAT AGCCTGTCCG AGGGTGATTT GAATTTATTG
CAAACGGTCA TCGATAGCCT TGGGGCTTCA ATCTATACCA AAGACTTGAG CGGCCGTTAC
ACCTTCGCCA ACCAAGCTTT CTGCGAAATG GTCGGAGCTG CGAGGGAAGA TGTTGTCGGG
CACTCCCTTG ATGATTTATT TGCCCCAAGC ACGGCCGCTC AGCTCAAACA GGATGACCTC
CGGGTACTGA CCACCGGTCA AACCATTGAA CAGAAAGAAA TTCGAGTCTC CAGGCGGGGC
GGAGAAAAAC ATGCATGTTT AACGGTCAAG AGACCGCTGT ATAACCCCCA AGGCAAAATT
ATCGGCCTTT CGGGAGTTTC CATCGACATC ACCAGCAATC AGAACTTTGA GGCTTTGCTG
AGTGACTCCC GACAATTCCT GGATATGCTG CTCAGCAATG TCGATGGTCA TTTCTATATC
AAGGGACACG ACCGTCGCTA TCTCTTTGTC AGTCCAAAGG TCGCGGAACA ATTTCAACGC
AGTCCGGAGC AGATTGTCGG TCATACCGAC GATGAGCTAT TACCGGAAGA AGAGGCTCGG
CGCGTCAAAG AATTCGATGA TCAGGTTTTT GAAACAGGCG AGCGGCAAGC CGGTGAGGAG
TACTTATCCG GAAGCACTGG GAAATTGCGC TATTTCTGGT CGATCAAGCA GTTGTTGCGC
AGGGCTGATC ACCCCGACTG TCTCATTGGA CTGTCAATCG ATATTACAGA GCTCAAAGAG
ACTCAACGCG CTGTCGCAAG TTCTGAAACA CGCTTCCGGA CCTTGTTCGA AGGCAGCCGG
GATGCGGTCC TTTTGCTTGA CCAGAAGGCG GGCATCATTG ACTGCAATCA AGCGGCAATA
GAGCTTCTGG GGCTGACCAG CAAGGCGGAT TGCCTTGGAC ATACCCCTGC TGATTTCTCA
CCCCCAACCC AAGCCTGCGG AACGCCCTCC ACCGAGCTGG CCGCCACCCA CATCGCCATC
ATTAAAACGG AAAAACAGCA TCGTTTTGAC TGGCTTATCC AACGACCGGA TGACGGTCCG
GCCTTGGCGG TTGAAGTCAG TGCCAACATC GTGGATCTGG ACGGTGAGGC CGTCATACTG
GCCACGGTCC GTGACCTGAC AGAACGGATG AAATACGAAG GGACCATTCA TCAGCTGGCG
TATTACGATG CGCTGACCGA CCTGCCAAAC CGACGCCTGT TTTTTGACCA CCTGGCGAAA
GCGCTGGCAC TGAGTCAGCG CAGCGGCAAC TATGGCGCGG TTATCTATTT GGACCTCGAC
AATTTCAAGC CGGTCAACGA CCAGTACGGT CACATTGCAG GTGACTTGCT GCTACAGGAA
GCCGCTCGAC GCCTCGCCGG ATGTGTGCGT GATCACGATA CTGTGGCCCG CCTTGGCGGC
GATGAGTTCG TGGTCTTGCT GGTCAATGTG GCACCGACGC CAGATGAGGC TTTGAAACAG
GCCAAACATG TCGCGGAACG CATCCGTGAT GACTTGGCCA AAACCTATTC CCTTGCCTTT
GATACAGAAG AGGAAATGGG GAAGACTGTC GAGCATCAAT GCTCGGCAAG CCTGGGAATG
ACCTTGTTCC CACCGTGCGG CGAAAGTGGC GAGGCCATTC TTCGGCGTGC TGATAACGCG
ATGTACCAGG CGAAAGCCGC AGGACGAAAT CAGATCAAGT TAGATGCAGG GTACGGAAAA
TCGGCGCACT GA
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| Protein sequence | MQAVGFLHTD SLSEGDLNLL QTVIDSLGAS IYTKDLSGRY TFANQAFCEM VGAAREDVVG
HSLDDLFAPS TAAQLKQDDL RVLTTGQTIE QKEIRVSRRG GEKHACLTVK RPLYNPQGKI
IGLSGVSIDI TSNQNFEALL SDSRQFLDML LSNVDGHFYI KGHDRRYLFV SPKVAEQFQR
SPEQIVGHTD DELLPEEEAR RVKEFDDQVF ETGERQAGEE YLSGSTGKLR YFWSIKQLLR
RADHPDCLIG LSIDITELKE TQRAVASSET RFRTLFEGSR DAVLLLDQKA GIIDCNQAAI
ELLGLTSKAD CLGHTPADFS PPTQACGTPS TELAATHIAI IKTEKQHRFD WLIQRPDDGP
ALAVEVSANI VDLDGEAVIL ATVRDLTERM KYEGTIHQLA YYDALTDLPN RRLFFDHLAK
ALALSQRSGN YGAVIYLDLD NFKPVNDQYG HIAGDLLLQE AARRLAGCVR DHDTVARLGG
DEFVVLLVNV APTPDEALKQ AKHVAERIRD DLAKTYSLAF DTEEEMGKTV EHQCSASLGM
TLFPPCGESG EAILRRADNA MYQAKAAGRN QIKLDAGYGK SAH
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