| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3354 |
|---|
| Symbol | |
|---|
| ID | 3568309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 3610195 |
|---|
| End bp | 3612108 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637681826 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_286553 |
|---|
| Protein GI | 71908966 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 0.79801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.640846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTAT TCCGACAACT CTGGCTCGCC GTGATCGTGA GCACCCTGAT CGCCTTCGCC
GGCAGCTTCG TGGCCAGCAT GCTGACGGCT CGCCACTATC TCGAACAGCA ACTGGCCATC
AAGAACAACG ACAACGCCGC CTCGCTGGCG CTATCGATGT CACAACTGGA CAAGGATCCG
GTCACGGTCG AACTCCAGGT TGCGGCCGTC TTCGACAGCG GCCAGTACGC TGCCGTCCGC
CTGATCGACC CGAACAGCGA GACGATGATC GAAAAAACCA GCCCCCCCGA TGCCGGCAAT
GTCCCGGCGT GGTTTGTACG CATTTTCCCG ATCGCCTCGC AACCCGGCCA CGCTCAGGTC
AACGCCGGCT GGAACCAGTT CGGCACCATC GAACTGGTCA GCCACAGCCA GTTCGCCTAC
AAGGAACTAT GGGATGGCGC GCTCAAGCTG CTCGGTTGGT TTGCCGTTGG CGGCGGCATC
ATGGGCCTGC TTGGCATGCA GGTCCTGCGC CGTATCCGCC GCCCGCTCGA TGCCGTGGTC
GGTCAGGCCC AAGCGATCAG CGAACGCCGT TTCATCAGCA TCCCGGAACC CAAAACACCG
GAACTGAAGA GCCTAGCCAG CGCGATGAAT GCCATGGTCG ACCGCCTGAA GGCCATGTTT
GCCGAGGAAG CCGCCCGCCT GGAACAGGTG CGCCGCGAAG CGACGCTGGA CAGCCTGACC
GGCCTGGCCA ACCGTGACTT TTTCATGAAT GAGCTGGCCG CCGCGCTCAG CGACGACGAC
GCCAGCGCTT CCGGCACCCT GCTCATGCTG CGCCTGGGCG ACCTGACCGG CATCAACCGC
CGGGCCGGCC GCGAAACGGC CGACGAAGTG CTACGCCGGA TTGGTGCCAC GCTCAACGCA
CTGGCCGCCG ACAAACCCAA CGCCGCCGCC GCTCGTCTGA ATGGCGCCGA CTTTGCGCTA
TTGCTGCCCG GCGTCCGGGA CCCGGCTCTG CAGGCCGAAA AGCTGCTGCA CACCCTGAGC
GACCTCGCCG CCGCCGGCCT GATCGAGGGG GAGCGCATCG GCTACGTGGC CAGCGGCGCC
TACCTGCACG GCCAGACTGT CGGCAGCCTG CTCTCCCGCA TCGATGCCGC GCTGGCCTCG
GCCGAGACGC AGAGCGGACT CGCCTGGTGC CGCGCCGAAA GCAATTCCGA ACAACAGGCC
ACCTCGAATG CCGACTGGAA GAAACTGCTT GATGGCGCCA TCGAAACCCA GCGCCTGCGT
CTGATCGAGT TCCCGGTCGC CGGCAGCGGC GGCCAGTTGC TTCATCTCGA ATGCCCACTC
CGCCTGCAGG CCACTGAAGA CGGCGAATGG CTGGCCGCCG GCGCCTTCAT GCCGATGGCC
TCGCGCCTGT CGATGACCAC TGAGCTCGAC CTGACCGTTG TTCGTCTCGC GCTGGACCGC
ATTGCGGCCG GCCTTCCCGC CGTCGCGGTC AACCTGTCCG GCGAATCGAT CCTCGACGCC
TCGTTCCGCG CCCGCCTCTA CGCCCAGATC GCCGCCCGCC GCGACCTGGC ACCGCGCCTG
TGGATGGAAG TCTCGGAAAT CGGCGCCTTC CAGCACTTCG AGGAATTCCA CGCCTTCTGC
GACGCCCTGC GGCCGCTCGG CTGTCGCCTC GGCATCGAGC ACTTCGGCCG CCAGTTCAGC
GAAATCGGCC GCCTGCACCG CATTGGCCTC GACTACCTGA AGGTCGACGG CAGCTTCATC
CGCGCCATCG ACAGCCAGCC TGGCAACCAA GCCTTCCTCA AGGGCCTGTG CAGCATCGCG
CACAATATCG GCCTGACCGT CATAGCCGAA AGCGTCCAGA CCGCTGAAGA ACTAGCCATC
CTGCCTGAAT TGGGCTTTGA CGGTGCCACT GGCCCGGCTG TACCAAGGAA CTGA
|
|---|
| Protein sequence | MSLFRQLWLA VIVSTLIAFA GSFVASMLTA RHYLEQQLAI KNNDNAASLA LSMSQLDKDP
VTVELQVAAV FDSGQYAAVR LIDPNSETMI EKTSPPDAGN VPAWFVRIFP IASQPGHAQV
NAGWNQFGTI ELVSHSQFAY KELWDGALKL LGWFAVGGGI MGLLGMQVLR RIRRPLDAVV
GQAQAISERR FISIPEPKTP ELKSLASAMN AMVDRLKAMF AEEAARLEQV RREATLDSLT
GLANRDFFMN ELAAALSDDD ASASGTLLML RLGDLTGINR RAGRETADEV LRRIGATLNA
LAADKPNAAA ARLNGADFAL LLPGVRDPAL QAEKLLHTLS DLAAAGLIEG ERIGYVASGA
YLHGQTVGSL LSRIDAALAS AETQSGLAWC RAESNSEQQA TSNADWKKLL DGAIETQRLR
LIEFPVAGSG GQLLHLECPL RLQATEDGEW LAAGAFMPMA SRLSMTTELD LTVVRLALDR
IAAGLPAVAV NLSGESILDA SFRARLYAQI AARRDLAPRL WMEVSEIGAF QHFEEFHAFC
DALRPLGCRL GIEHFGRQFS EIGRLHRIGL DYLKVDGSFI RAIDSQPGNQ AFLKGLCSIA
HNIGLTVIAE SVQTAEELAI LPELGFDGAT GPAVPRN
|
|---|
| |