| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3341 |
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| Symbol | |
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| ID | 3568296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 3594972 |
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| End bp | 3596939 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637681813 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_286540 |
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| Protein GI | 71908953 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0053874 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTATCCGG AAAGTAATAT TTTGACGCAA AGTCCGGCCG TAGCCGGCCG AAAGTTCGTG
TTGTTCGCCA TGGGGGCGGT TGTCCTGGTC TGGTGCCTGA TTGGCCTCGA TCTGTGGATT
GCCAGTCGCC ATGCTGCGGC GAAGATTTCG TTTCTGCCAG GCGAGACTAC GCCCTCCGAG
TTGCCGACGT GGAAGCTTTT TTTGCTGGTC CTGAGCGTGC TTCTCACCGC GCTGGTCGTC
CAGGCTTACC GTCAACTGCT CGCAACAAAA CGCCAGGTGG AAGCCGGGCT GGCCCTGCAA
CGGCTGATCG TCGACCACGC GTCTGAAGCC ATGATGCTCA CCGACAGCGC CCAACGCATT
CTCTCGGTGA ATTCGGCCTT TGAGCAGATT ACCGGCTACG CCGGCAAGGA TGTTTTTGGC
AAGACGCCAA CCATGCTCAG TGCGGGGCAT CAGGGTCTGG CCTCTCACCG GAATGTCTGG
GATTTTGTGG CCGAGAACGG TTCCTGGGAA GGTGAAATCT GGGATCGCCG GAAGGATGGC
ACGATCTATC CGAAGCAGAT GCGCATCACG GCCATCTGCG AGGATGGTGT GCAGCTCTCG
CATTTCGTCG CCGTCTTTTC CGATATCAGC GAAAGTCGGG CGCAGGCGGA GCGCCTGGAG
TATCTGGCTC GTCATGATCC GCTGACCAAT CTGCCGAATC GGCTGGCGCT CGATGCGCAT
CTCGATACCC TGCTGGAGGG GGCGACCCCG GGGATCAACC GCCTGGCGCT GTTGATCATC
GATCTGGATA ATTTCAAGAC GATCAACGAC TCGCTTGGCC ATCATGCCGG TGACCGACTA
CTGAGTGAGT TGGCTCGCCG GCTGGGGGCG CAGATGGACC TGACGAAGCG CCTTTTTCGC
CTGGGTGGGG ACGAGTTTGT CGTCGTTGTC GATCAACTGA TCAATGAAGA GGCGGTGATC
GAACTGGTCC AGCAGCTGGC CGGGGGCATC GGTGACCCGT GCAACATCGA TGGACATGTA
TTGCACTGCA CATCATCGAT TGGCATCAGC CTGTATCCGG AAGATGGCCG GGATGCCCAG
GCGCTGATCC GGAATGCCGA TACGGCCATG TACTACGCCA AGGCCAATGG TCGTAACAAC
CACAAGTTCT TCACCGAGCC GATGAATGCC GCGGCCAATA AACGCCTGCA TCTCGAAAGC
GAACTGTGGT GCGCGCTGGC CGAAAACCAA CTGGTGCTGT ATTACCAGCC GCAAATCGAT
CTGCTCAGCG GCAAGGTTGT CGGTGTTGAA GCCCTGGTTC GCTGGCGACA CCCGTTGCGC
GGACTGATTC CGCCGGCCGA ATTTATCCCG GTGGCCGAAG AATGTGGTCT GATCCTGCCG
CTCGGTCACT GGGTCTTGCT GACGGCCTGC CGGCAGGCCA GGGAATGGCT TGATGCCGGT
ATCGACATGG GGGAAATGGC CGTCAATATT TCGGCCCATC AGTTCCGGCA GCCCGAATTT
ATCTCGTCGG TCCAGGCCAT TCTGGCTGAA ACGGGCCTGC CCACCGGGCG CCTGGAATTG
GAAATCACCG AAAGCACGAT CATGCACGAG GTCGATGCGG CGATCCAGAC GCTGGCCCAA
CTTCGGGCCA TGGGTATCAA GCTGGCCATC GACGATTTTG GCACCGGCTA TTCGTCCTTG
GCCTACCTGC GCCGTTTCCC GCTTGATCGC CTGAAAATTG ATCGCTCATT CCTGGCCGAT
GTCGAAACCG ATCCGGATGC TGCCTCGCTG GTCACTTCGA TCGTGCTGCT TGGCCGCTCG
CTGGGCTTGC AACTGGTGGC CGAGGGGGTT GAAAACTTCG CCCAGGCCGA ATTCCTCCGT
ACCCTGGAGT GCGAACGGGT GCAGGGCTTC CATTTCTATC AGCCGGTTTG TGCGGAAGAG
GTCGTTGGCG TCGGCCGTTT TCTGGAAAAT ACTGCCCTGC AGACCTGA
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| Protein sequence | MYPESNILTQ SPAVAGRKFV LFAMGAVVLV WCLIGLDLWI ASRHAAAKIS FLPGETTPSE
LPTWKLFLLV LSVLLTALVV QAYRQLLATK RQVEAGLALQ RLIVDHASEA MMLTDSAQRI
LSVNSAFEQI TGYAGKDVFG KTPTMLSAGH QGLASHRNVW DFVAENGSWE GEIWDRRKDG
TIYPKQMRIT AICEDGVQLS HFVAVFSDIS ESRAQAERLE YLARHDPLTN LPNRLALDAH
LDTLLEGATP GINRLALLII DLDNFKTIND SLGHHAGDRL LSELARRLGA QMDLTKRLFR
LGGDEFVVVV DQLINEEAVI ELVQQLAGGI GDPCNIDGHV LHCTSSIGIS LYPEDGRDAQ
ALIRNADTAM YYAKANGRNN HKFFTEPMNA AANKRLHLES ELWCALAENQ LVLYYQPQID
LLSGKVVGVE ALVRWRHPLR GLIPPAEFIP VAEECGLILP LGHWVLLTAC RQAREWLDAG
IDMGEMAVNI SAHQFRQPEF ISSVQAILAE TGLPTGRLEL EITESTIMHE VDAAIQTLAQ
LRAMGIKLAI DDFGTGYSSL AYLRRFPLDR LKIDRSFLAD VETDPDAASL VTSIVLLGRS
LGLQLVAEGV ENFAQAEFLR TLECERVQGF HFYQPVCAEE VVGVGRFLEN TALQT
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