Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_3060 |
Symbol | |
ID | 3566235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 3302766 |
End bp | 3303659 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637681531 |
Product | farnesyl-diphosphate synthase |
Protein accession | YP_286260 |
Protein GI | 71908673 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 0.016258 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000723246 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAGCATCA AGCCCTTCGC CGAATGGATG GCGGTCACCC AGGACCGCGC AGAATCCGCG CTCGGCCGCT TTTTGCCCGG CCCCGACTGC ATTCCCGCCC GCCTGCACGA AGCCATGCGC TACGCCACCC TCGGCGGCGG CAAGCGCGTC CGTCCGCTGC TCGCCCACGC CGCCGGCGAA TTGACCGGTG CGACGCCGGA GGCCCTCGAC ATCGTCGGCT GCGCCGTCGA AATGATCCAC GCCTATTCGC TGGTCCATGA CGACCTGCCG TGCATGGACG ATGACGTGCT GCGCCGCGGC CGTCCGACCT GCCACGTCGA ATTCGACGAA CCGACCGCGC TGCTCGTCGG TGACAGCCTG CAGACCATGG CCTTCGAACT GCTCGCCAGC CAGCCGCTTG GCGAACCGAA GCAACAACTC GAAATAATCG CCCTGCTCGC CCACGCCAGC GGTTCGCGCG GCATGGCCGG CGGCCAGGCC ATCGACCTCG CCTCGGTCGG CAAACCGCTG ACCCAGCCCG AACTCGAACT GATGCACGCG CTGAAAACCG GCGCCCTGAT CCGCGCCGCC GTGTTGCTTG GCGCCCTGGC TGGCCAGCCC CTTTCGGCCG ACGAACGAAC CAGCCTCGAC CGTTTCGCCA AGCGCGCCGG CCTGCTCTTT CAGGTGGTCG ATGACATCCT CGACTGCACC GCCAGCACCG CTACGCTGGG CAAGACTGCC GGCAAGGACG AGGCGGCCGA CAAACCGACC TACGTCGCCC TGCTCGGCCT TGACGCGGCC CGCACCTACG CCGACGAACT GCGCGCCGAC GCCCGCGACG CCCTGAGCAT CTTCGGCGAG CGTGCCAGCC GCCTCAATCA GTTGGCCGAC TTCATCTGCC ACCGGCAATT CTGA
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Protein sequence | MSIKPFAEWM AVTQDRAESA LGRFLPGPDC IPARLHEAMR YATLGGGKRV RPLLAHAAGE LTGATPEALD IVGCAVEMIH AYSLVHDDLP CMDDDVLRRG RPTCHVEFDE PTALLVGDSL QTMAFELLAS QPLGEPKQQL EIIALLAHAS GSRGMAGGQA IDLASVGKPL TQPELELMHA LKTGALIRAA VLLGALAGQP LSADERTSLD RFAKRAGLLF QVVDDILDCT ASTATLGKTA GKDEAADKPT YVALLGLDAA RTYADELRAD ARDALSIFGE RASRLNQLAD FICHRQF
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