| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2848 |
|---|
| Symbol | lysS |
|---|
| ID | 3566410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 3065073 |
|---|
| End bp | 3066578 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637681317 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_286048 |
|---|
| Protein GI | 71908461 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.266623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACG CCGAACAGCA AGCCCCGGTC CAGCAAGACG AAAACCAACT CATCGCAGAG
CGCCGTGCCA AACTGGCCGA GTGGCGCAAG ACCGGGAAGG CTTTCCCGAA TGATTTCCAG
CGTGAGAACA CCGCTGCCAA GGTCCTCGAA GGCTATGGCG AGAAAACGGC GGAAGAGCTT
GAAGGCCTGC CGATTGAAGT CAAGGTTGCC GGCCGCCTGA TGCTCAAGCG CGTCATGGGC
AAGGCTTCCT TTGCCACCAT TCAGGATCTG TCGGGCCGTA TCCAGATCTA CATCACCCGG
GACCGCGTTG GTGAAGAGGT CTATGCCGAC TTCAAGACCT GGGACTTGGG CGACATCATT
GGCGTCACCG GTAGCCTGAT GAAGACCAAG ACCGGCGAGC TGTCGATTCA GGCCGCCGAA
ATCCGCCTGC TGACCAAGTC GCTGCGCCCG CTGCCGGACA AGTTCCACGG CCTGGCCGAT
CAGGAAATGA AGTATCGCCA GCGCTATGTC GACCTGATCA TGAACGAGGA AACGCGCTTC
ACCTTCCGCG CCCGTTCGGC CATCGTTGCC TCTATCCGCA ACTACATGAC CGGCCATGGC
TTCATGGAAG TCGAAACGCC GATGATGCAC CCGATCCCGG GCGGTGCCTC GGCCAAGCCG
TTTGTCACGC ACCACAACGC GCTCGACATG CAGCAGTTCC TGCGCATCGC GCCGGAGCTG
TACCTGAAGC GCCTGGTCGT CGGCGGTTTC GAGAAGGTTT TCGAAATCAA CCGCAATTTC
CGCAATGAAG GTCTCTCGCC GCGCCACAAC CCCGAATTCA CGATGATGGA GTTCTACGAG
GCCTACGCGA ACTACCACAC GCTGATGGAC TTCACCGAAG GCCTGCTCCG CCACGCCGCC
CGCGAGGCAC TGGGCAAGGA AGTCTTCGTC TATCAGGGCC GCGAACTGGA CCTCTCCAAG
CCTTTCCATC GCCTTACCAT CAACCAGGCC ATCCAGCGCC AGCATCCGGA ATTTAGTGAT
GCCGAGCTGG CCGATCCGGA ATTCCTGAAA GCCAAGATCA AACACTTCGG TGAGCCGCTC
AAGCCGGGCG GTCTGGGCAG CCTGCAACTG CAACTGTTCG AAGCCTGCGC CGAAGCCCAC
TGCTGGGAGC CGACTTTCAT CATCGACTAC CCGGTCGAAG TGTCCCCGCT GGCCCGTGCC
TCGGACACCA ACCCGGAAAT CACCGAGCGT TTTGAGCTGT TCATCGTTGG GCGTGAAATC
GCCAACGGGT TCTCGGAGTT GAATGATGCC GAAGATCAGG CAGCGCGCTT CCAGGAACAG
ATGAAAGCGA AGGATGCCGG CGACGAGGAA GCGATGTATT ACGACGCCGA TTTCATTCGC
GCGCTGGAAT ATGGCCTGCC GCCGACCGGT GGCTGTGGCA TCGGCATTGA TCGCCTGATC
ATGCTGCTGA CCGACGCCGC CGCGATTCGG GATGTCATCC TATTCCCCTC CATGCGCCCC
GAATGA
|
|---|
| Protein sequence | MSNAEQQAPV QQDENQLIAE RRAKLAEWRK TGKAFPNDFQ RENTAAKVLE GYGEKTAEEL
EGLPIEVKVA GRLMLKRVMG KASFATIQDL SGRIQIYITR DRVGEEVYAD FKTWDLGDII
GVTGSLMKTK TGELSIQAAE IRLLTKSLRP LPDKFHGLAD QEMKYRQRYV DLIMNEETRF
TFRARSAIVA SIRNYMTGHG FMEVETPMMH PIPGGASAKP FVTHHNALDM QQFLRIAPEL
YLKRLVVGGF EKVFEINRNF RNEGLSPRHN PEFTMMEFYE AYANYHTLMD FTEGLLRHAA
REALGKEVFV YQGRELDLSK PFHRLTINQA IQRQHPEFSD AELADPEFLK AKIKHFGEPL
KPGGLGSLQL QLFEACAEAH CWEPTFIIDY PVEVSPLARA SDTNPEITER FELFIVGREI
ANGFSELNDA EDQAARFQEQ MKAKDAGDEE AMYYDADFIR ALEYGLPPTG GCGIGIDRLI
MLLTDAAAIR DVILFPSMRP E
|
|---|
| |