| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2182 |
|---|
| Symbol | |
|---|
| ID | 3566676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2355510 |
|---|
| End bp | 2358245 |
|---|
| Gene Length | 2736 bp |
|---|
| Protein Length | 911 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637680651 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_285391 |
|---|
| Protein GI | 71907804 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.368954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGC TCCTCCTCGA CCCCCTGTTC AACCAGCACG CCCGCCTGCT CGAACTCAAG
ACTGCCCTGC CTGACGCTGC CTTGATTGTC GAACGCTTCA ATGGTCGCGA AGCCATCTCT
GAATCCTTCC GCTTCGAAAT CGACTGCGTC TCAACCAACG CCTACTTCGA CCTCAAGCCA
CTGATCGGCG AAGAGATCAC CCTGCGCCTT TTGCAGGCCG ACGGCAGCAA GCGCTCCTGG
CACGGCTACG TGACGCAAGC CATGCAACTC GGTGCCGATG GCGGGCTGGC CCGCTACCGC
CTGATCATGG AGCCCTTCCT CGCCTTCCTG GCCCAGCGTC GGGACTGCTA CCTGTTTCAG
GACAAAACGG TCATCGATAT CATTGGCCAG ATTCTGGCCG ACTACCCGGA AGCCCATTGG
TCAAATCAGG TGACCCAGTC GCTACGCTCC CATAGCGTGG CAACCCAGTA TCGGGAAACG
GATTTCGAGT TCATCCATCG CCTGCTCTCC GAAGAAGGCC TCTCCTTCCG TTTCGAACAC
GACCAATCCG CCGCAGCCGG TGACGATGCC ACCCACGCCC GCCACCAGTT GATCGTCTTC
GACCGGGAGA CCGAGCTGCC CGATGGGGTA CAACCGACCA TCCGTTTCCA CCGCAACAAC
GCAACGGAGG CGTCGGACAC TCTGCAACAG TGGCATGAAA TCCGCACTGC CCTGCCCAAC
GCCGTGTCGC TGGCCGGCTG GGACTACAAG ACCTTGGTCG CGACCGGTGC CCAGGCTCAG
AGCAGCCATG ACAACGGCGC CTTGCCCCGG CTGGAAATCC ACGACGCCTC CCGCCCTTAC
CGCTTTGAAG ACAGCGCTGC CGCCCAGTTG CGCACCGACC TGGCGCTCGC CGCCATCGAA
GCAAACTATC GCCGCTTTGC CGGTGAAAGC AGCGTTCGTC AATTAGCCGA AGGAACCGTC
ATCACGCTGA CCCAGCATGA GGCCTATGTC AGTGACGAGT CGCGTTTCAA GGTGTTGTCC
GTTGATCATC ACGGAGCCAA CAATCTAGGC GCCAGTGCTG CCGAGCTGTT GGGCAGCACC
GAGGTCGAGG CCGGTAGTTA TCGCAATACG CTAAATGCGC AGCCAGCGTC GATCCCGGTC
GTCTCCGCGC TGCTGGCCAA ACCGGCGGCC CACCCGCAGA CCGCGCTGGT GGTTGGCTTA
TCCGATCAGG TCATCACCAC CGAGCGCGAT CACCGGATAA AGATCCAGTT TCACTGGCAG
CGCGGTGAAG CACCCAACAC CGGCGGTATC TCCGCAACCG GCCCGAACGG GCGAAGCGCC
GGCAAGACCG GCAATGCACC GGGCAACGAC CAATCCGGCA CTTGGGTGCG CGTCGCCGAA
TGGCTGTCGG GTCCGAACTG GGGGAGCCAT TTCCTGCCCC GGATCGGTAA CGAGGTTCTG
GTCGATTTCC TCGACGGTGA TATCGACCGA CCAGTGATTG TTGGCCAGAG CTATAACGGA
GCGGACCTGC CGCCCTTCTC GGCTGGCCAC GAGGCGAATG CCAATCACCC CGGTGTACTG
TCAGGCTGGA TGAGCCACAA CCACGAGGAA GGCCATAACC AGTGGGTGGT CGATGATGCA
CCGGGGCAAC TGCGCACCCG TCTGGCCACC AGCGAGAATG CCGGCCAGCT CGGATTGGGA
CATCTGGTGC ACCAAGCCCC GGAAAGCGCC AGCCGAGGTG CTTGGCGCGG CAGCGGCTTT
GAACTGAGAA CCGATGGCTG GCTAGCGGTG CGAGCCGGCG AAGGCATCCT GATTTCAGCC
ACAGCTCGCC CGAATGCCCA AAGTACCCAA ATGGATGTGG CCGAAACCGT GGCGCAGTTG
AAGGTAGCTG AAGAAACGGC CAAGGCCTTG TCCGATGCGG CGAGCCAGCA ACAGGCCTTG
CCGCTGAAGG CGAATGCGGC GCAAACGAAA TTTATCGAAG GCATCGATCC CAAGCAACAA
GGCAAATTCT CCGGCAGTGT CGGTGGGCAG GCGGCCCAGA AGGCGCAACC GGGGAGCCGC
GAACTGGGCG ATCCGACTGA GCGTTATGCT GAACCGTTCA TCCTGGCCGA AGCACCGGGC
GATATCGGCC TGGCCAGCCC GGCCAGTACC CTGCTCTTCG CTGGGGCCAA TCTGCATGTG
ACGGCACAGC AGGATATGCA TATCGCCAGT GCGTATACGG TGTCGACGGC AGTAGGACAA
GGCGCCAGCT GGTTCAGTCA CGCCGGCGGG ATCAAGAGCT TTGCCCAGGC TGGAACACAC
ACCATTCAGG CGAATACCGA TCAGCTGGAA ATCCTCGCCG ATCAATCCCT GACCGTGACC
AGCACCAATG ACGAGATTCA CATCCTGGCC AAGGACAAGA TCGTCCTGCA AGCCGGGCAG
TCTTCCGTGA CGCTGGAGGG GGGCAATATC ACCTTCGCTT GTCCGGGGAA TTTCTCGGTC
AAGGGGAGTG GGAATGCGTT TATGGGGCCG GGGAGTGACC CGGCCCAGGT GGAGGGGTTG
CCGGATTCAC GGGCGAAGGT GTTCGATGAA CAAATTCGTG CGCTGCATTC TGAAACTGGG
CAGCCTATTG CCGAGATGCC ATACAAAATG GTGACAGGAG ATGGCGAGGT CTTCTATGGA
TTTACTGACC AAGAAGGAAA AACCATGCGC ATCGGATCTG CCGAGCCGAG CACAGTAAAA
GTATATTGGG GTGAAATGCC ACCCAGCGAG ACATGA
|
|---|
| Protein sequence | MTQLLLDPLF NQHARLLELK TALPDAALIV ERFNGREAIS ESFRFEIDCV STNAYFDLKP
LIGEEITLRL LQADGSKRSW HGYVTQAMQL GADGGLARYR LIMEPFLAFL AQRRDCYLFQ
DKTVIDIIGQ ILADYPEAHW SNQVTQSLRS HSVATQYRET DFEFIHRLLS EEGLSFRFEH
DQSAAAGDDA THARHQLIVF DRETELPDGV QPTIRFHRNN ATEASDTLQQ WHEIRTALPN
AVSLAGWDYK TLVATGAQAQ SSHDNGALPR LEIHDASRPY RFEDSAAAQL RTDLALAAIE
ANYRRFAGES SVRQLAEGTV ITLTQHEAYV SDESRFKVLS VDHHGANNLG ASAAELLGST
EVEAGSYRNT LNAQPASIPV VSALLAKPAA HPQTALVVGL SDQVITTERD HRIKIQFHWQ
RGEAPNTGGI SATGPNGRSA GKTGNAPGND QSGTWVRVAE WLSGPNWGSH FLPRIGNEVL
VDFLDGDIDR PVIVGQSYNG ADLPPFSAGH EANANHPGVL SGWMSHNHEE GHNQWVVDDA
PGQLRTRLAT SENAGQLGLG HLVHQAPESA SRGAWRGSGF ELRTDGWLAV RAGEGILISA
TARPNAQSTQ MDVAETVAQL KVAEETAKAL SDAASQQQAL PLKANAAQTK FIEGIDPKQQ
GKFSGSVGGQ AAQKAQPGSR ELGDPTERYA EPFILAEAPG DIGLASPAST LLFAGANLHV
TAQQDMHIAS AYTVSTAVGQ GASWFSHAGG IKSFAQAGTH TIQANTDQLE ILADQSLTVT
STNDEIHILA KDKIVLQAGQ SSVTLEGGNI TFACPGNFSV KGSGNAFMGP GSDPAQVEGL
PDSRAKVFDE QIRALHSETG QPIAEMPYKM VTGDGEVFYG FTDQEGKTMR IGSAEPSTVK
VYWGEMPPSE T
|
|---|
| |