| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2176 |
|---|
| Symbol | |
|---|
| ID | 3566670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 2349887 |
|---|
| End bp | 2351371 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637680645 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_285385 |
|---|
| Protein GI | 71907798 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0000122545 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC AGGCTGCAGT TGCCTCCGCG CCGGCCAATG CTCGCGAATC GGGCCTGCTC
GACCAGATCA TCGAAGAGAG CCGTGTCGCC CAGTCCGATC AGGAAAAGAA CCGGGCCCGC
GACATTATCA GCGAACTGGT CAATCAGGTG CTGGATGGCG AAGTGGTTGT TTCCGAGAAT
CTGGCAGCAT CCCTCGATGC CCGCGTGGCC GAACTCGATC GCCTGATTTC CGAGCAGCTA
AGTGAAGTGA TGCATGCTCC TGAATTCCAA GCCCTCGAAA GTGCCTGGAC CGGTCTGCAT
TACCTTTGCA AGCAGACCTC GACTGGCCAG CAACTCAAGA TCAAGCTGTT CAACGCTTCG
AAGCGCGAAT TGGTCAAAGA TTTCAAGACA GCCATCGATT TCGACCAGAG CGCCTTGTTC
AAGAAGGTTT ATGAAGAAGA ATTCGGCACT TTCGGTGGTG CGCCGTTTGG TACCTTGATC
GGTCAGTACG AAATCAGCCG TCAGCCCGAG GATATGTACT TCGTCGAACA GATGTCGCAT
ATCGCCGCTG CCTCGCATGC GCCGTTCATT GCTTCCGCCG CGCCGCAGTT GTTCGGCCTG
GAGTCACATA CCGAACTCGG CAAGCCGCGC GACATGGGCA AGGTGTTCGA TACCGTCGAA
TACGCCAAGT GGAAGTCCTT CCGTGAGTCC GAGGATTCGC GCTATGTCGG TCTCGCCTTG
CCACGCTTCC TCGGCCGATT GCCCTATAAC CCGATTGATG GCGAAGTCAC TGAGGGCTTC
AATTTTGTTG AAGAGGTTGA TGGTACTGAT CACGACAAGT ACCTCTGGTG CAATGCCGCC
TTTGCCTTTG CGGCCCGTCT GACCGATGCC TTCGAGAACT ATGGCTGGTG TGCCGCGATT
CGCGGCGTTG AAGGTGGTGG CCTGGTTGAA GATCTGCCGA CGCACACCTT CCGCACCGAC
GACGGTGAAG TAGCACTCAA GTGCCCGACG GAAATTTCGA TTACCGATCG TCGCGAAAAA
GAGTTGAGCG ATCTTGGCTT CATCCCGCTG GTTCATTGCA AGAACACAGA TTACGCGGCG
TTCTTTGGCG CGCAATCAGC GCAGAAGGCA AGAAAGTACG ATACCGACTC GGCCAATGCC
AATGCTTCGC TGTCCGCCCA GTTGCAATAC ATGTTTGCTG TGTCCCGTAT CGCTCATTAC
ATGAAGGCGA TGATGCGCGA CAAGATCGGC AGCTTTGCTT CCGCGGCCAA TGTGCAGAAC
TATCTGCAGC GATGGATTGA TCAGTATGTA ACCGCCGACG ATTCCGCTTC CCAGGAAACC
AAGGCGCAAT TCCCGCTGCG CGAGGCTTCC GTGGAAGTCA GCGAAGTGCC GGGTCGCCCT
GGTGTTTATC GGGCCGTGTC GTTTATCCGG CCACATTTCC AGCTGGATGA GCTTTCGGTA
TCGCTGCGTC TGGTTGCCGA GTTGCCGCAA TCGACCAAGA GCTAA
|
|---|
| Protein sequence | MSAQAAVASA PANARESGLL DQIIEESRVA QSDQEKNRAR DIISELVNQV LDGEVVVSEN
LAASLDARVA ELDRLISEQL SEVMHAPEFQ ALESAWTGLH YLCKQTSTGQ QLKIKLFNAS
KRELVKDFKT AIDFDQSALF KKVYEEEFGT FGGAPFGTLI GQYEISRQPE DMYFVEQMSH
IAAASHAPFI ASAAPQLFGL ESHTELGKPR DMGKVFDTVE YAKWKSFRES EDSRYVGLAL
PRFLGRLPYN PIDGEVTEGF NFVEEVDGTD HDKYLWCNAA FAFAARLTDA FENYGWCAAI
RGVEGGGLVE DLPTHTFRTD DGEVALKCPT EISITDRREK ELSDLGFIPL VHCKNTDYAA
FFGAQSAQKA RKYDTDSANA NASLSAQLQY MFAVSRIAHY MKAMMRDKIG SFASAANVQN
YLQRWIDQYV TADDSASQET KAQFPLREAS VEVSEVPGRP GVYRAVSFIR PHFQLDELSV
SLRLVAELPQ STKS
|
|---|
| |