| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2105 |
|---|
| Symbol | |
|---|
| ID | 3567001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | - |
|---|
| Start bp | 2266119 |
|---|
| End bp | 2268161 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637680578 |
|---|
| Product | PAS |
|---|
| Protein accession | YP_285318 |
|---|
| Protein GI | 71907731 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 0.292551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG CGGAAAACGA CCTTTCGAAC GAACGATTGC ATGATTTTTC TCGCAGTTCT
GCTGACTGGT TTTGGGAAAC GGATACTGAT CACCGGTTTA CCTATCTGTC CGATGATATT
GAGTCTAAAG TCGGCGTCCC TATTGACTAC TTGATGGGGA AAAGCCGCAG GGAACTGGCC
ACGCAACTCA CTAACAATCC TCCCGGAGAC TGGGAGAAGT ACTTGGCCGC CTTGAATGCG
CGAGAAGCTT TTCGGGATTT TGAATACTGC GCCTTAGCGC CGAATGGCGT GGCCTATTGG
TTCAGCATCA GCGGCGTCCC GTTCTTTGAC GAACAGGGGG AATTTCGTGG CTATCGGGGG
GTCGGGCGTG ATGTCACCGA AACGCACTCG ATGCAGGTTG AGCTGCACCG TTACCGGAGC
CACCTTGAAG ACGAGGTCCG AAGGCGCACG GAAGAATCAT TGAAGGAGCG TGAACGGGCA
ATATCGGCGT CGCAGGCAAA GTCGATTTTT CTCGCCAACA TGAGCCATGA AATTCGTACG
CCGATGAATG CGATCGTCGG ACTGACGCAT TTGTTGCGCA AAGAGATCAC GACGCCCGCA
CAGCTTGAAA AGCTCGCCCA GGTTTCTGCG TCTGCTGACC ATTTGTTATC GGTCATCAAC
GATATTCTCG ATATCTCAAA AATCGAGTCC GGCAATGCCG CCCTGGACGA ACTGGATTTT
GAGCTGGAAG GCATGATCCG GCGGGTCAGC AGCGTCATCG CACTGCGCGC CCAGGCCAAG
GGACTGGAAC TCATCGTCGA TATCAGAACG CTGCCGACTG TCCTGCATGG CGACCCCACC
CGACTGAGCC AGGTCCTGAT CAATTTTCTT GGCAATGCAG TCAAATTTAC CGTGCAGGGG
TCGATTACCT TGCGCGGCCG GATAGAGGCC GAAACGGCAA CAGATATGGT TGTCCGATTC
GAAGTCGAAG ACACCGGCAT CGGCATTTCG CCTGACGCAC AAGAAAAAAT CTTTGAGGCG
TTTGAACAGG CGGATCAATC AACCACCCGC AACTATGGCG GAACGGGATT GGGACTGGCG
ATTGCCAAGC ATGCGGCGAA AATGATGAAA GGCGATGTCG GGGTACGCAG CACGCCTGGC
GTCGGCAGCG TATTCTGGAT TACCGCCAGA CTCGGGAAAG TCAATGCAGC CGGCCCGGAG
TTCATTGTCC CGGAAGCGGT AGGCGTATCC ACTTTGGTGG TAGACGACTT GCCGTTAACG
CAGGCGGTCC ACTCTCAATT GCTCAAACGC ATCGGCCTCA ACCCGATAGC GGTGATGTCC
GGTCAAGAAG CTTTAACCGC TGTGCAGATT GCCGACCGCG AACTGCATCC GTTTGGGATT
GCCTTTATTG ACCTTCACAT GCCCGACTTG AATGGCCTGG AAGTCATTGC GAAAATCCGA
GCCTTGCCCT TGCGATACCA GCCGCATTGC GTTCTGGTCA CTGCCGCTGG TATTCAAAGC
ATTGTCGACG AAGCCAAGTC AGTCGGATAT GCGGCAGTTT TGCAGAAACC AGCCAGCTTG
GCTGGCCTGC GTGAAATTGT CAGCCAGCTT CTGACAACAC AGGGAAGCCA ATTTCAATAT
CTGAAAGAAA AAAAACGTCC TTGCGAAGCC TTGCTTCGGG AACACAAAGC CGGTTGCCGC
ATTCTGCTGG TTGAGGATGA ACCAATCAAT CAAATGATCG CCCGCGAATT GCTCGAAGAT
GCTTCGCTGG TTGTCCACGT GGCGGACAAC GGCCAACAGG CGGTTGAAAT GGCGCTATCA
ACGCCTTCTC CTTATGACCT TATCCTGATG GACGTACAGA TGCCGGTTTT GGACGGCATT
GCCGCTGCCC ACTGTATCCG CGAAAAGCGC CCGGATCTCC ATACGCCCAT CATTGCGCTG
ACGGCAAATG CGTTTTCTGA TGACCGCCGC AAATGTCTGG CTGCAGGGAT GAATGATTTT
GTCTCCAAAC CCGTTGATCC GGATGTTCTA TTCGAGATCA TCTGGAAATG GCTGTCAAAA
TAG
|
|---|
| Protein sequence | MSNAENDLSN ERLHDFSRSS ADWFWETDTD HRFTYLSDDI ESKVGVPIDY LMGKSRRELA
TQLTNNPPGD WEKYLAALNA REAFRDFEYC ALAPNGVAYW FSISGVPFFD EQGEFRGYRG
VGRDVTETHS MQVELHRYRS HLEDEVRRRT EESLKERERA ISASQAKSIF LANMSHEIRT
PMNAIVGLTH LLRKEITTPA QLEKLAQVSA SADHLLSVIN DILDISKIES GNAALDELDF
ELEGMIRRVS SVIALRAQAK GLELIVDIRT LPTVLHGDPT RLSQVLINFL GNAVKFTVQG
SITLRGRIEA ETATDMVVRF EVEDTGIGIS PDAQEKIFEA FEQADQSTTR NYGGTGLGLA
IAKHAAKMMK GDVGVRSTPG VGSVFWITAR LGKVNAAGPE FIVPEAVGVS TLVVDDLPLT
QAVHSQLLKR IGLNPIAVMS GQEALTAVQI ADRELHPFGI AFIDLHMPDL NGLEVIAKIR
ALPLRYQPHC VLVTAAGIQS IVDEAKSVGY AAVLQKPASL AGLREIVSQL LTTQGSQFQY
LKEKKRPCEA LLREHKAGCR ILLVEDEPIN QMIARELLED ASLVVHVADN GQQAVEMALS
TPSPYDLILM DVQMPVLDGI AAAHCIREKR PDLHTPIIAL TANAFSDDRR KCLAAGMNDF
VSKPVDPDVL FEIIWKWLSK
|
|---|
| |