| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1965 |
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| Symbol | |
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| ID | 3567411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 2111293 |
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| End bp | 2114736 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637680436 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_285181 |
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| Protein GI | 71907594 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.550833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.680854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGCTT CCAAGCCCCT GCTTTCCCTC CCCGCCCTGC CCAAGGCCGG TGCCCGACTC
GATCTGCCGT CGCTGGCCGG GTCGGCCGAT GCGTTGGCGC TGGCTGAAAT TGCCGTCGGC
AATCCCGGCA AGCTGTTGGC CGTGGTCACC GCCAATGCGG CCGATGCGCA GCGGCTGCTC
GACGAGATTC CATGGTTCGC GCCTAATCTG CGCGTGCGGC TGCTGCCGGA CTGGGAAACG
CTGCCTTACG ACACCTTTTC GCCGCACCAG GACCTGGTTT CCGAGCGGCT GGCGACCTTG
TGGGCGGCGA CGCAGGGCGA GCTGGACATC CTGCTCGTGC CGGCCACCAC GGCCGTCTAT
CGGCTGGCGC CGCCGGCTTT CCTGGCCGCC TACACTTTCG CCTTCAAGAA AGGGGAGACG
CTGGATGCCG AGAAGTTCCG CAGCCAGGTG ACGCTGGCCG GCTACGCGCA TGTGACGCAG
GTGGTATCGC CCGGCGAGTA TTCGATCCGC GGCGGGCTGA TCGACCTCTT CCCGATGGGG
TCGCAACTGC CCTACCGGCT CGACCTGTTC GACGACGAGA TCGAGAGCAT CAAGACTTTC
GACGTCGATA CCCAGCGCAC GGTCTATCCG GTGCCGGAAG TGCGCCTGCT GCCGGCGCGC
GAATTCCCGA TGGACGACAA GGGCCGCACG CATTTCCGCC AGGCCTTCCG CGAGACTTTC
GAGGGCGACC CGGCCAAGTC GGGCATCTAC AAGGACGTTT CCCAGGGCAT CGCCAGCGCC
GGCATCGAGT ACTACCTGCC GCTGTTCTTC GACGAAACGG CCACCGTTTT CGACTACCTG
CCCAGGGATG CCGTGTTCGT CACGCACGGC GACGCGCCGG CCGCCATCGC CGCCTTCTGG
AACGACACCC GCTCGCGCTA CGCCATGCTG CAGGGCGACA AGGCCCGGCC GCTGCTGCCG
CCGGAGCAGT TGTTCCTGAC CGACGAGGCG TTCTTCACGG CGGCCAATTC CTACGGTCGA
CTGGTATTTT CGGCCAAAAC CGACCACCCG GCGGCGACCG CGCTGCCCGA CATTTCAGTC
GACCGCCGCG CCGAAGACCC GCTCGGCAAG CTGAAGGCCT ACCTCGCCAG CCAACCCGGC
CGCGTGCTGC TGCTGGCCGA ATCGGCCGGT CGCCGCGAAA CGCTGGCCAC CATGCTGACC
GAACACGGCC TGAAGCCTGC CGCCAGTGCC GATTTTGCCG GCTTCGCCGC CGCCGATGCG
CCGCTGGCAC TGGGCGTCGG CCCGCTGCAT GGCGGCTTCG CCCTGCCCGA TCTCGCCTTC
ATCACCGAAA CCGAGCTCTA CGCCGGCGCA CCCCGCCGCA CCCGCCGCGA GGCCGCGCGC
AAGGCCAGTT TCGACAACTG GCTGAAGGAC CTGACCGAAC TCAAGGTCGG CGACCCAGTC
GTCCATGAAA GCCACGGCAT CGGCCGCTAC CGGGGCCTGA TCCGCATGGA CCTCGGCAAC
GGCGAGCAGG AGTTCCTCGA ACTGCACTAC GCCAACGAGG CCAAGCTGTT CGTGCCAGTG
GCGCAGTTGC ATGTCATTTC GCGTTATTCG GGCGCCGAGC CGGAAGCCGC GCCGCTGCAC
ACGCTCGGTT CCGGCCAGTG GGAAAAGGCC AAGCGCCGGG CTGCCGAGCA GGCGCGCGAC
ACCGCCGCCG AACTGCTGAC CCTGTACGCT GCCCGCGCTG CCCGCCAGGG CCATGCTTTC
AGCTTCCAGG AAAACGATTA CGAGGCCTTC GCCGACGGTT TTGGCTTCGA GGAAACCCAC
GATCAGGCGC AGGCCATCGC CGCGGTGATC GAGGACATGC GTTCCGGCAA GCCGATGGAC
CGCCTGGTCT GTGGCGACGT CGGTTTCGGC AAGACCGAGG TTGCCCTGCG CGCCGCCTTC
TGCGCGGTGG CCGGCGGCAA GCAGGTGGCC GTGCTGTGCC CGACCACCCT GCTCTGCGAA
CAGCATTACC AGACCTTCGT CGACCGCTTC GCCGACTGGC CGGTCAAGAT CGCTGAAATC
TCCCGCTTCA AGACCGCCAA GGAATCGGCG CAGGCTTTGC AGGAACTGGC CGAAGGCAAG
ATCGACGTGA TCATCGGTAC GCACAAGTTG ATCGGCAAGG ACGTCAAGTT TCAGCGCCTC
GGCCTGGTCG TCATCGACGA GGAACACCGC TTCGGCGTCC GCCAGAAGGA AACGCTGAAG
GCCATGCGCG CCGAGGTCGA TGTGCTGACG CTGACCGCGA CGCCGATCCC GCGCACGCTG
GCGATGAGCA TGGAAGGCCT GCGCGACTTC TCGGTGATCG CCACCGCGCC GCAGAAGCGG
CTGGCGATCA AGACCTTCGT CAGCAAGTTC TCCGACGGCA TCATCCGCGA AGCCGTGCTG
CGCGAGCTGA AGCGCGGCGG CCAGGTGTAT TTCCTGCACA ACGAGGTCGA TACCATCGAA
AACATGCGGG AAAAGCTGGA AAAGCTGGTT CCCGAGGCGC GCATCGTCAT CGGCCACGGC
CAGATGAACG AACGCGAACT GGAGCGCGTG ATGCGCGACT TCACCCAGCA GCGGGCCAAC
CTGTTGCTGT GCACGACCAT CATCGAGACC GGCATCGACA ACCCGCACGC CAACACCATC
CTGATCAACC GCTCCGAGAA GTTCGGCCTC GCCCAGCTCC ACCAGTTGCG CGGCCGCGTC
GGCCGTTCGC ACCACCAGGC CTATGCCTAT CTGCTGGTCC AGGATGAAAA GGCGATGACC
AAGCAGGCCA AGCAGCGGCT GGAAGCGATC CAGATGTCCG AGGAACTCGG CTCCGGCTTC
TTCCTGGCCA TGCACGACCT GGAAATCCGC GGCGCCGGCG AGGTGCTCGG CGACAACCAG
TCGGGCGAGA TGCAGGAAGT TGGCTTCAAC CTGTTCACCG AAATGCTCAA CCGCGCCGTC
GCCCATTTGA AGCAGGGCAA GGCCATCGAC ACCGTCGATC TGACCCAGCC GCTGGGCATT
TCAACCGAAA TCAACCTGCG CACCCCGGCC CTGCTGCCCG ACGCCTATTG CCCGGACGTC
CACGAGCGCC TGACGCTGTA CAAGCGCCTG GCCAACTGCG AGAACGCCGA GGAAATCGAT
ACCCTTCAGG AAGAACTGAT CGACCGCTTC GGCGAACTGC CGCTGCAAGG CCAGTCGCTG
CTCGCCACGC ACCGCCTACG TATCCTGGTC AAACCACTTT GCATACAGAA GCTCGATGCC
TCGACTGACC AGATCACGCT GCAGTTCGGG CCGGAGTTCG CCAAGAACCC GCCTATCGAG
CCGATCAAGA TTATTCATTT GATTCAGAAC AACCGCAGCT ATAAATTAGC CGGACAGGAT
AAAATTTCCC TTTTGCGCCA CTGCCCGACC TTGAACGACA AGGTTGCCGC AGTCAAAGAC
ATGATTCGCC AGCTGAGCCA CTGA
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| Protein sequence | MSASKPLLSL PALPKAGARL DLPSLAGSAD ALALAEIAVG NPGKLLAVVT ANAADAQRLL
DEIPWFAPNL RVRLLPDWET LPYDTFSPHQ DLVSERLATL WAATQGELDI LLVPATTAVY
RLAPPAFLAA YTFAFKKGET LDAEKFRSQV TLAGYAHVTQ VVSPGEYSIR GGLIDLFPMG
SQLPYRLDLF DDEIESIKTF DVDTQRTVYP VPEVRLLPAR EFPMDDKGRT HFRQAFRETF
EGDPAKSGIY KDVSQGIASA GIEYYLPLFF DETATVFDYL PRDAVFVTHG DAPAAIAAFW
NDTRSRYAML QGDKARPLLP PEQLFLTDEA FFTAANSYGR LVFSAKTDHP AATALPDISV
DRRAEDPLGK LKAYLASQPG RVLLLAESAG RRETLATMLT EHGLKPAASA DFAGFAAADA
PLALGVGPLH GGFALPDLAF ITETELYAGA PRRTRREAAR KASFDNWLKD LTELKVGDPV
VHESHGIGRY RGLIRMDLGN GEQEFLELHY ANEAKLFVPV AQLHVISRYS GAEPEAAPLH
TLGSGQWEKA KRRAAEQARD TAAELLTLYA ARAARQGHAF SFQENDYEAF ADGFGFEETH
DQAQAIAAVI EDMRSGKPMD RLVCGDVGFG KTEVALRAAF CAVAGGKQVA VLCPTTLLCE
QHYQTFVDRF ADWPVKIAEI SRFKTAKESA QALQELAEGK IDVIIGTHKL IGKDVKFQRL
GLVVIDEEHR FGVRQKETLK AMRAEVDVLT LTATPIPRTL AMSMEGLRDF SVIATAPQKR
LAIKTFVSKF SDGIIREAVL RELKRGGQVY FLHNEVDTIE NMREKLEKLV PEARIVIGHG
QMNERELERV MRDFTQQRAN LLLCTTIIET GIDNPHANTI LINRSEKFGL AQLHQLRGRV
GRSHHQAYAY LLVQDEKAMT KQAKQRLEAI QMSEELGSGF FLAMHDLEIR GAGEVLGDNQ
SGEMQEVGFN LFTEMLNRAV AHLKQGKAID TVDLTQPLGI STEINLRTPA LLPDAYCPDV
HERLTLYKRL ANCENAEEID TLQEELIDRF GELPLQGQSL LATHRLRILV KPLCIQKLDA
STDQITLQFG PEFAKNPPIE PIKIIHLIQN NRSYKLAGQD KISLLRHCPT LNDKVAAVKD
MIRQLSH
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