| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1749 |
|---|
| Symbol | |
|---|
| ID | 3568704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 1879475 |
|---|
| End bp | 1880842 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637680218 |
|---|
| Product | peptidase M50, putative membrane-associated zinc metallopeptidase |
|---|
| Protein accession | YP_284966 |
|---|
| Protein GI | 71907379 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 0.853109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGACC TGCCATTCTA TCTCGCCGCT TTTGCGGTGG TCCTCGGCGT CCTGATCGTT
GTCCATGAAC TGGGTCACTA TCTGGCGGCC CGCTGGTGCG GTGTAAAGGT CTTGCGTTTC
TCTGTTGGTT TCGGTCGCGT CCTGTGGAAA AAAGAACTGG GTGAAGATCG CACAGAGTGG
GCGTTGAGCA TTTTCCCGCT GGGCGGTTAT GTCAAGATGC TTGATGAGCG AGAGGGCGAC
GTGGCGGTCA GTGAGGCCCA TCGCGCTTTC AATCGGCAAG GGGTCGGGAA GCGCAGCATT
ATCGTTGCGG CGGGACCCAT GGCTAATTTT GCCCTGGCGA TTCTGCTGTA TTGGGCGATC
TTCATGCATG GCAGCGAGGA ATTGCTGCCA GTGCTCGGTA CACCACCGGA TGGGTCGCCG
GCAGCGCTGG CCACTGTCAA GAATGGTGAG CAGGTTCGCC GCGTTGATGG GCAGTTGGTT
GCAACCTGGA ACGATCTGCG CTGGCTATTG TTGCGGAAGG CTGTTGATCA GGAGAGTGTT
GAACTGGAAG TGATCAACGA GCGAAGCGAA ATCGCTTCAC ATCGACTCTA TCTTGCGGCA
GCCGGAGAGC AGGGCTGGGA GGGGGATGCC CTGGAAAAGC TGGGTATCCG CTTTTATCGT
CCAAACATGC CGCCGGTGAT CGGCAAGGTC GTCGCTGGCG GTCCGGGGGC CAAGGCTGGA
TTGCAGTCGG GAGACCGGGT GCTGGCCATT GATGGCCAGC CTGTCGCGCT GTGGATGGAG
TTTGTTGCGA AGGTGCGGGA TTCCGCTGGG CAATCGCTCA GGCTTGATCT AGAACGTGCC
GCTGGCAATG TGTCGGTGGA GGTGATTCCA GAAGCGGCTT CCGAACGCGG GCATAGCGTC
GGGAAAATTG GGATTGCCGT TGCAGAAAAT CCCGATTCCA GGCGTGAGGT ACGATCCTTC
GTCAGTTATG GGTTTGTCGA GGCAGGCCGC CGGGCCTTGG TCGAAACCTG GGATAAATCC
CTGTTTAGCC TGGTCATGAT GGGCAAGATG CTCACCGGTG AAGTTTCGTG GAAAAATCTC
TCGGGGCCGG TAACGATTGC CGATTATGCC GGGCAGTCGG CGCGACTTGG GCTGGATTAC
TACCTCAAGT TCATGGCGCT GGTCAGTATC AGTCTTGGTG TCCTGAATCT GCTGCCTATC
CCGGTGCTGG ATGGCGGGCA TTTGTTGTAT CATATGATCG AAGTCGTCAG GCGCAGGCCG
CTTTCGGAGC GTGCCATGGA AATTGGGCAG CAGATTGGTA TGTCCATTCT CTTTTCCTTG
ATGGCTTTCG CCTTTTTTAA TGACCTGACC CGCCTGTTTA ACGGCTGA
|
|---|
| Protein sequence | MNDLPFYLAA FAVVLGVLIV VHELGHYLAA RWCGVKVLRF SVGFGRVLWK KELGEDRTEW
ALSIFPLGGY VKMLDEREGD VAVSEAHRAF NRQGVGKRSI IVAAGPMANF ALAILLYWAI
FMHGSEELLP VLGTPPDGSP AALATVKNGE QVRRVDGQLV ATWNDLRWLL LRKAVDQESV
ELEVINERSE IASHRLYLAA AGEQGWEGDA LEKLGIRFYR PNMPPVIGKV VAGGPGAKAG
LQSGDRVLAI DGQPVALWME FVAKVRDSAG QSLRLDLERA AGNVSVEVIP EAASERGHSV
GKIGIAVAEN PDSRREVRSF VSYGFVEAGR RALVETWDKS LFSLVMMGKM LTGEVSWKNL
SGPVTIADYA GQSARLGLDY YLKFMALVSI SLGVLNLLPI PVLDGGHLLY HMIEVVRRRP
LSERAMEIGQ QIGMSILFSL MAFAFFNDLT RLFNG
|
|---|
| |