Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_1604 |
Symbol | |
ID | 3568612 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 1721425 |
End bp | 1722381 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637680072 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_284823 |
Protein GI | 71907236 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 65 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGATC CTATTGAAGA TTCCGGCGAT TATAGCCGAA CTGAACCGCT CCGCCTGACC GTTCCTGATG CCTCTTATGG CCGCCGTCTC GACCAGGTGC TGGCTGAACT GCTGCCGCAA CATTCGCGTA ACCGTCTGCA GGGTTGGGTC CGCGAAGCCT GTGTGCAGGT TGATGGCAAA CCGGAAACCG AACCCAAGCG CAAGATGATG GGTGGAGAGA AGCTGCTGGT CAGCGAGCCG GAAGACGTCC GCAACCAGCC AGAGCTGCCT GAAGATATTC CACTCGATGT CGTTTTTGAG GACGAGACGC TGCTCGTCAT CAACAAACCG GCCGGACTGG TGGTCCACCC GGGTAGCGGC AATTGGAGTG GCACCTTGAT GAATGCGCTG CTTCACCATG TGCCGGGTAT CGAGGTCGTG CCGCGAGCAG GCATCGTGCA CCGGCTGGAC AAGGACACCA GTGGCCTGCT GGTGGTCGCC AAGACTCTGG AGGCGCAGAC GGACCTCGTC CGGCAGTTGC AGGCGCGGAC GGTGCGGCGG ATTTATCTGG CCTTGGCTGC GGGTGCGATG AAGCACGAAG GTACGGTCAA TGAGCCGATC GGACGGCATC CGTCGCAGCG CATCAAGATG GCCATCGTGC CGGAAAACCG GGGTGGCAAG CCGGCGATTA CCAATATCCG CATTCTGGAG GCCTTTACCT ACACGACCTT TGTCGAGTGC TCGCTGGAAA CCGGTCGTAC GCACCAGATC CGCGTGCACA TGGCGGCGAT CCATCACCCG CTGGTTGGTG ATCAGGTCTA TGGCAAGCAC AACCCGAAGT TGCCGGAATT TCCACGGCAG GCGCTGCACG CTACCCGCCT TGGCCTGGTT CACCCGCTTA CCGGTCTGAA AATGCAGTGG GAAGTGCCGA TGCCGGAGGA TATGCGTAAC CTGCTCGATA ACCTGCGCTA TGGCTGA
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Protein sequence | MNDPIEDSGD YSRTEPLRLT VPDASYGRRL DQVLAELLPQ HSRNRLQGWV REACVQVDGK PETEPKRKMM GGEKLLVSEP EDVRNQPELP EDIPLDVVFE DETLLVINKP AGLVVHPGSG NWSGTLMNAL LHHVPGIEVV PRAGIVHRLD KDTSGLLVVA KTLEAQTDLV RQLQARTVRR IYLALAAGAM KHEGTVNEPI GRHPSQRIKM AIVPENRGGK PAITNIRILE AFTYTTFVEC SLETGRTHQI RVHMAAIHHP LVGDQVYGKH NPKLPEFPRQ ALHATRLGLV HPLTGLKMQW EVPMPEDMRN LLDNLRYG
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