| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1487 |
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| Symbol | |
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| ID | 3568997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | - |
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| Start bp | 1603477 |
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| End bp | 1605126 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637679955 |
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| Product | helix-turn-helix, Fis-type:Nif-specific regulatory protein |
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| Protein accession | YP_284706 |
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| Protein GI | 71907119 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.659732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCGAT CTAAGAAAAA CCACGAGAAC AGCATGCACG AACACACCAT CCACCCGCTT
GGCGATGAAT GCCCGCCCAC CGGCGGCTTC TGCCGAACGC ACGAGCTGAA CATCCAGCTG
CTGGCCGCGC TCTACGCCGT CAGCCGGGTG CTCAGCCGCT CCCTCGACTT CAACGAAACG
CTGCGCGATG TGCTGCGCGT GCTGCACGAC GAGGCCGGAC TGACCCGTGG CCTGATCAGC
GTGGTGGACC CGGACAGCGG CAAGCTGAAC ATCCACACCA TCTACACGCC GGAAGGCCCG
ATCCTCGACG ACAACCAGTA CGGCCCGGGC GAAGGCGTCA TTGGTCTGGT CCTCGAAAAA
CCACGCACCA TCAAACTGGC CCGCGGCGCC GATGAGCCGC ATTTCCTGAA CCGCCACGGT
GTCTATCAGC CCGACTTGCC CTTTATCGCC GTACCGATCA AGGTCGGCGG CGACCTGAAG
GGCGTCCTCG CCGTCCAGCC GGAAGCGCCG GAAGACGGCT TACTGGAAGA GCGCGCCCAG
TTCGTCGAAA TGGTTTCCAA CCTGATCGGC CAGAGCTTGC GGCTGGCGAT GGACGTTGCC
CAGGAAAAAT CGACCCTGCT CGAGGAGCGT GACCTGCTCC GGCGCACCGT GCGCCACCAG
TTCGGCTTCG ACAGCATGGT CGGTCGCTCG GCCGTGATGC GCCGCGTCTT CGACCAGGCA
CGCATGGTCG CCAAGTGGAA TACCACGGTA CTGATCCGCG GCGAAACCGG CACCGGCAAG
GAACTGATCG CCAATGCCAT CCACTACAAC TCGCCGCGCG CCCGCAACGC GCTGGTCAAG
CTCAACTGCG CCGCGCTGCC GGAAAACCTG CTTGAGTCGG AGCTCTTCGG CCACGAGCGC
GGCGCCTTCA CCGGTGCCGT CGAGTCACGC AAGGGTCGCT TCGAGCAAGC CCACGGCGGC
ACCCTCTTTC TCGATGAAAT CGGCGAGGTT TCGCCAGCTT TCCAGGCCAA GATGCTGCGC
ATCCTGCAGG AAGGCGAATT CGAGCGAGTC GGCGGCAGCA AGACGATCAA GGTCGATGTC
CGCATCATCG CCGCCACCCA CCGCGATCTG GAAACCGCCG TTGAAATGGG CGACTTCCGC
GAAGACTTGT TCTACCGCCT CAACGTCATG CCCCTCTTCC TGCCGCCGCT GCGCGAACGG
ATCGAGGACA TCCCGGAAAT CGCCCGTCAC CTGCTCGGCA AGATCGGCAA CGACCAGAAG
CGCAAGCTGA CCCTGACCGA CATGGCCAAT CGCCGCCTGG CCAGCCACGA ATGGCCGGGC
AATGTCCGTG AGCTGGAAAA CTGCCTGGAA CGCGCTGCGG TGTTGTCCGA CGATGGCCAC
ATCGATGTCG ACCTGATCCG CTTCCCCAGC GCCCGCGAAC GAAGCAGCCC CCGCCCCCTG
CGCACCGCCC CATCAGCGTT CAGCCCGGCT TCTGCCTCAA GCCCGGAAAT CGACATCGAC
GACCCGAACC TCTCGGAAAA AGAACGCGTC ATTGCGGCGC TGGAACAGGC AGGCTGGGTC
CAGGCCAAGG CGGCGCGCAT TCTCGGCATG ACGCCTCGGC AGATCGCCTA CCGGATTCAG
ACGCTGAATA TCGAGGTCAA GCAGTTCTAG
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| Protein sequence | MTRSKKNHEN SMHEHTIHPL GDECPPTGGF CRTHELNIQL LAALYAVSRV LSRSLDFNET
LRDVLRVLHD EAGLTRGLIS VVDPDSGKLN IHTIYTPEGP ILDDNQYGPG EGVIGLVLEK
PRTIKLARGA DEPHFLNRHG VYQPDLPFIA VPIKVGGDLK GVLAVQPEAP EDGLLEERAQ
FVEMVSNLIG QSLRLAMDVA QEKSTLLEER DLLRRTVRHQ FGFDSMVGRS AVMRRVFDQA
RMVAKWNTTV LIRGETGTGK ELIANAIHYN SPRARNALVK LNCAALPENL LESELFGHER
GAFTGAVESR KGRFEQAHGG TLFLDEIGEV SPAFQAKMLR ILQEGEFERV GGSKTIKVDV
RIIAATHRDL ETAVEMGDFR EDLFYRLNVM PLFLPPLRER IEDIPEIARH LLGKIGNDQK
RKLTLTDMAN RRLASHEWPG NVRELENCLE RAAVLSDDGH IDVDLIRFPS ARERSSPRPL
RTAPSAFSPA SASSPEIDID DPNLSEKERV IAALEQAGWV QAKAARILGM TPRQIAYRIQ
TLNIEVKQF
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