| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_1362 |
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| Symbol | |
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| ID | 3569143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 1482150 |
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| End bp | 1484738 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637679830 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_284581 |
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| Protein GI | 71906994 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.525156 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000167572 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTATCAGC GGTATCGACG ACTGGTTATC AGACTAGAAC AGGCTCTTCG TACCAGCGAA
GCGCGTCTGC ATTCCTTTTT TGATGCCACG CCGGACGCCT TGCTGATCAG CGATGCCCAC
GGCACCATTA CCATGGCCAA CCAGCAGGTC GAGAAATTGC TTGGCTATGT GGCGGCGGAA
CTGGTCGGCA AGTCGATCGA AGATCTGGTG CCGAACCGTT TCAAGGCCAG CCATCCGGTA
TTACGCAGTG AGTTCACCGC TTCACCCCGG GCTCGCCGGA TGGGCAACGG CATGGCCGTC
AAGGCGCGGC GAAAGGACGG CAGCGAATGT GATGTTGATG TCAGCCTGAG CCGGATTGAG
ACGGACGAGG GCATGTTTTT CGCCAGCGCC TTGCGTGACA TCAGTGAGCG CAAGAGGAAA
GAAGAAGAGC TGCGGCGGCA GAACGGCGTG CTCTCCACCA TCTTCCAGAG CTTCCCCGGC
GGCATTACGC TGTTTGACGC GGACTTGCGC CTGGTGGCGT TCAACGACCA GTTCAAGGCC
TTGCTGGACC TGCCGGATGT GCTATTCGAG CAGCCTGAGC CGGATTTTGA GACGTTGATA
CGTTACAACG CCGCGCGTGG CGAATATGGC CCCGGCGACC CCGAACAACA GGTCGCCGCG
ATCATCGCGA GAACCAAAAA ATTTGTTCCC CACAAAATCG AGCGGGTACG CCCCGACGGA
ACCTCACTGT CGATTCGCGG TGTGCCGCTC GCTAGCGGCG GTTTTCTCTC CATCTATACC
GACATCACTG ACCGAAAACA ATCCGAAGAA CAACTGCGCA TTGCCGCAGC CGCTTTCGAA
TCCCAAACCT GCATGATCAT CACCGATGCG AACCGGGTGA TCCAGCGCGT TAACCGGGCC
TTCATCGAGA CCACGGGTTA CTCGGCGGAG GAGGCTGTCG GCCAGACCCC GCGCCTGCTC
CAGTCGGGTC GTCACGGTGC AGATTTCTAT CGTGAAATGT GGGAAACCAT CCACCGCACG
GGGGCATGGC AAGGTGAAAT CTGGGGGCGG CGCAAGAACG GTGAAGTGTA TCCCAAATGG
TTGTCCATCT CGGCGGTCGT TGGTACCAAT GGCAGGGTCA GCCATTACAT CGGCACCCAT
AACGACATCA CAGAGCGCAA GAAGGCCGAA GAACGAATCA ACGCCCTGGC CTTCTTCGAT
CAACTGACCG GCCTGCCCAA CCGGACGCTG TTACTGGATC GTTTGAAGCA AACGATACTA
AGCAGTGGCC GTAGTGATAG TCACGGTGCC TTGTTGTTCA TCGACCTCGA CAACTTCAAA
ACGCTCAATG ACACGCTCGG CCACGATGTG GGCGACCAGC TGCTCAAGCA AGTGGCTCTG
CGCCTGACGC ACTGTGTGCG CGATGGCGAC ACGGTCGCCC GACTGGGCGG TGATGAATTC
GTGGTGGTCC TCGCCAACTT GAACACCAAC GACAAAGAGG CGGCCCAGGA TACCGAAACC
GTGGCCGAGA AGATTCTCGC CACGCTCAAC CAGACCTACC AACTCGGCCA TGTGACCCAC
CACAGCAGCG CCAGCATCGG TGCCACCTTG TTCAAGGGGC CGCTGATTCC GATCGATGAC
CTGATGAAAC AGGCCGACCT CAGCATGTAC AAGGCCAAGG CTGCAGGCCG CAATGCGGTT
CGTTTCTTCG ACCCTTCGAT GGAAATCGCG GTCAAGGTAC GGGCCGAGAT GGAGGATGAC
CTGCTGCGCG CCCTGGCAGA GAAACAGTTC CTGCTCCACT ACCAGGCCCA GATGGTCGGC
GAGCGCCTGA CCGGTGCTGA AGTGCTGCTG CGCTGGCAGC ACCCCCAGCG CGGCATGGTT
TCGCCGGCCG AGTTCATTCC GCTGGCCGAG GAAACCGGCT TGATTCTGCC CCTGGGCCAC
TGGGTGCTGG AAACGGCTTG TACCCAGTTG GCGCAATGGG CGGGGCGACC GGAAGTGGCC
CATCTGACCC TGGCGGTGAA TGTCAGTGCC CATCAGTTTC GCCAGAACGA CTTCGTGGAT
CAGGTGCTTG GGGTTCTCGA AAAGACCGGT GCCAATCCCC AGCGCCTCAA GCTGGAGCTG
ACGGAAAGCC TGCTCGTCGA GAACGTCGAA GACATTATTG ACAAGATGGC TGCACTCAAG
CACCGCGGTG TGGGCTTTTC TCTCGACGAC TTCGGCACTG GCTATTCCTC GCTGTCTTAT
CTGAAGCGCC TGCCACTGGA CCACTTGAAG ATTGACCAGT CCTTTGTTCG CGACGTACTC
ACCGATAGCA ACGATGCCTC GATTGCCCGA ACCATCGTCG CGCTGGCCAA CAGCCTGGGG
CTGGGGGTGA TCGCCGAAGG CGTTGAAACC GAAGCGCAGC GCGACTTTCT GGCCAGTTCC
GGTTGCCATA CCTATCAAGG CTATTACTTC AGCCGGCCGC TACCGATCGA GGATTTCGAA
TCCTTCACGT TAACGGCCAT TTGTAGCAGC TGTCCCGAGC GGACGGATCC CAAAACCTGC
GGATGCAAGG CATTCGTTTC ACTCATGTCC CAACTGAAGT CTGAGAGCAT CATCACTAAT
GAAAACTAA
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| Protein sequence | MYQRYRRLVI RLEQALRTSE ARLHSFFDAT PDALLISDAH GTITMANQQV EKLLGYVAAE
LVGKSIEDLV PNRFKASHPV LRSEFTASPR ARRMGNGMAV KARRKDGSEC DVDVSLSRIE
TDEGMFFASA LRDISERKRK EEELRRQNGV LSTIFQSFPG GITLFDADLR LVAFNDQFKA
LLDLPDVLFE QPEPDFETLI RYNAARGEYG PGDPEQQVAA IIARTKKFVP HKIERVRPDG
TSLSIRGVPL ASGGFLSIYT DITDRKQSEE QLRIAAAAFE SQTCMIITDA NRVIQRVNRA
FIETTGYSAE EAVGQTPRLL QSGRHGADFY REMWETIHRT GAWQGEIWGR RKNGEVYPKW
LSISAVVGTN GRVSHYIGTH NDITERKKAE ERINALAFFD QLTGLPNRTL LLDRLKQTIL
SSGRSDSHGA LLFIDLDNFK TLNDTLGHDV GDQLLKQVAL RLTHCVRDGD TVARLGGDEF
VVVLANLNTN DKEAAQDTET VAEKILATLN QTYQLGHVTH HSSASIGATL FKGPLIPIDD
LMKQADLSMY KAKAAGRNAV RFFDPSMEIA VKVRAEMEDD LLRALAEKQF LLHYQAQMVG
ERLTGAEVLL RWQHPQRGMV SPAEFIPLAE ETGLILPLGH WVLETACTQL AQWAGRPEVA
HLTLAVNVSA HQFRQNDFVD QVLGVLEKTG ANPQRLKLEL TESLLVENVE DIIDKMAALK
HRGVGFSLDD FGTGYSSLSY LKRLPLDHLK IDQSFVRDVL TDSNDASIAR TIVALANSLG
LGVIAEGVET EAQRDFLASS GCHTYQGYYF SRPLPIEDFE SFTLTAICSS CPERTDPKTC
GCKAFVSLMS QLKSESIITN EN
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