| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0860 |
|---|
| Symbol | |
|---|
| ID | 3569847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 931501 |
|---|
| End bp | 932688 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637679318 |
|---|
| Product | MFS family nucleoside/H(+) symporter |
|---|
| Protein accession | YP_284086 |
|---|
| Protein GI | 71906499 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00000000354031 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000116391 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATGCTT TGCCTTACTG GCGCCTCTCG GGCTATTACT TTTTCTATTT CGCCTTCATT
GGCGCGTTTT CGCCCTATTT CGGGCTCTAT CTCCAATCCC TGAGTTTTTC TGCCTGGGAC
ATCGGACTGT TGATGTCGCA GATGCAGCTG ATGCGTCTGT TTGGCCCCAA TCTGTGGGGG
TGGCTGGCAG ATCGTTTCGG TCGGCGCCTA GCGATCATTC GTCTGGCGGG GCTGATTGGC
CTGGCCGGAT TTACCGCGTT TTTCTGGCTC GATAAATTAC CTGCCATGCT GCTTGCGATG
GCAGTTTTGG CATTTTTTTG GAGTGCCGCG CTACCTCTGG TTGAAACGCT GACCTTCGAT
CATCTGCGTG ACGAGCGTGG GCGTTACAGT CGTATCCGTC TTTGGGGTTC GATCGGGTTC
ATCATTGCCG TCATGGCGAC CGGGGCGCTA CTCGATATTG CGCCGCCGGT GGGCGTGCTC
TGGGTGTGCT GGGTGATCCT GGTTGGCATT CTGCTCTATG CGCTGACCTT GCCCGAGTCG
CCACCGCTTC CGCACCCCCG AGACGCTCAG CCGATTGGCG CCATTCTCCG TCAGCCGAAA
GTGTTCGCGC TGATGGCCGC CTGTTTTGCC ATGTCGGCAG CGCACGGCGC CTTCTATGTC
TTCTATTCGA TCCATCTCGA TGCCCATGGC TACACCAAGA CAGAGGTTGG GCTGCTTTGG
TCGCTCGGTG TGGTGGCGGA AATCGTCGCT TTCATGTGCA TGGCGCGCCT GGCGAAGCGT
TTTTCGCTAC GAACCATTCT GCTGGCCTGT TTTGCCGCCG CCGTCGTTCG TTTTTTGCTG
ATGGGCTGGG GCGTCGAGTC TGCCGCTATC ATGATTTTTG TCCAGTTGCT GCATGGTCTG
ACCTTTGGGG CCTATCACGC ATCGGCAATC GCCGCAGTCA ATCTATGGTT TCCCGGCAAG
ACTCAGGGGC GGGGGCAGGC GCTATATTCC AGCCTGTCTT TCGGTGCCGG TGGTTTGCTC
GGCGCCTTGA TCAGTGGTCG GACCTGGGAC TGGCTAGGCT CCGGTTGGAC TTTCACGCTT
GGCTCAGTTT TCGCGCTGAT TGGCTTGTTT CTGATCTGGG GCTGGGTTGG CGGTAATGCG
GTGCTTGATG CCCCGGAACG GGCAAAAACC GGCGATCCTG TGCAATAA
|
|---|
| Protein sequence | MHALPYWRLS GYYFFYFAFI GAFSPYFGLY LQSLSFSAWD IGLLMSQMQL MRLFGPNLWG
WLADRFGRRL AIIRLAGLIG LAGFTAFFWL DKLPAMLLAM AVLAFFWSAA LPLVETLTFD
HLRDERGRYS RIRLWGSIGF IIAVMATGAL LDIAPPVGVL WVCWVILVGI LLYALTLPES
PPLPHPRDAQ PIGAILRQPK VFALMAACFA MSAAHGAFYV FYSIHLDAHG YTKTEVGLLW
SLGVVAEIVA FMCMARLAKR FSLRTILLAC FAAAVVRFLL MGWGVESAAI MIFVQLLHGL
TFGAYHASAI AAVNLWFPGK TQGRGQALYS SLSFGAGGLL GALISGRTWD WLGSGWTFTL
GSVFALIGLF LIWGWVGGNA VLDAPERAKT GDPVQ
|
|---|
| |