| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0827 |
|---|
| Symbol | |
|---|
| ID | 3569452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 898879 |
|---|
| End bp | 900099 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637679283 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_284053 |
|---|
| Protein GI | 71906466 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 66 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0216762 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATA CCAAGACCAG CACCCCGATG CCTGCCCAAA TGCCACGTGG CATCTGGATG
CTCGGCTTTG TCAGTTTGCT GATGGATATT TCCTCCGAGA TGATCCACAG CCTGCTGCCG
CTGTTCATGG TCGGCACGCT GGGGGCGAGC GCCCTGGTCG TTGGGCTGAT TGAAGGGCTG
GCCGAAGCGA CGGCCTTGAT CGTCAAGGTG TTCTCCGGGG CGCTCAGTGA TTACCTCGGC
AAGCGCAAGG GGCTGGCGGT ATTCGGTTAC GCGCTCGGTG CGCTGAGCAA GCCGGTCTTT
GCGCTGGCCT CGGGCACCGG GCTGGTCCTC GCTGCCCGGC TGGCCGATCG CGTCGGCAAG
GGCGTCCGCG GTGCGCCACG CGATGCGCTG GTCGCCGACA TCGCTCCGCC TGAACTGCGG
GGCGCCGCCT TCGGTTTGCG CCAGTCGCTC GATACCGTTG GCGCCTTTGT CGGGCCGCTA
CTGGCGGTGG GGTTGATGCT GTTGTGGGCG GACGATTTCC GGGCGGTGTT CTGGGTGGCG
GTCATTCCCG GCCTGCTCGC CGTGGCCGTG CTGGTCTTTG GCGTGCATGA GCCGGATCGA
CCGGCCCACG CGGTTCGGCG CAATCCGATC AGTCGGGCCA ATCTGCGACG ACTGGGGGGC
GCTTATTGGT GGGTGGTCGC GGTGGGCGGA TTATTTACGC TGGCCCGCTT CAGCGAAGCC
TTTCTGGTGC TGCGGGCGCA GCAGGGCGGC ATGGCACTGG CGCTGATTCC GCTGGTCATG
GTCGCCATGA ATATCGTTTA TTCGCTGTCG GCTTATCCCT TCGGCAAACT GTCGGATCGC
GTCAGCCACA CCAAGTTGCT GGCAATCGGT TTGCTGGTCC TGATTGCCGC CGATCTCGTG
CTGGCCAGCA GTTCGCATTG GGCAGTCGTG CTTGCTGGCG TGGCGCTATG GGGCATCCAC
CTCGGTATGA CGCAGGGCCT GCTGGCCACG ATGGTGGCCG ATACGGCGCC GGCCGATTTA
CGGGGAACCG CTTTCGGCTT TTTCAATCTG ATCAGTGGGC TGGCCATGTT GCTGGCCAGC
GTTTGTGCCG GCTGGCTGTG GGACATCTAC GGAGCCGCAT TTACCTTCTA TGCCGGCGCA
GTCTTCTGCC TGCTAACCTT GTTCTTGTTA AAAATACGGC CAGAACATCA ATCTCGCCTT
TCCGGCACCA AGGCTGGATA A
|
|---|
| Protein sequence | MTDTKTSTPM PAQMPRGIWM LGFVSLLMDI SSEMIHSLLP LFMVGTLGAS ALVVGLIEGL
AEATALIVKV FSGALSDYLG KRKGLAVFGY ALGALSKPVF ALASGTGLVL AARLADRVGK
GVRGAPRDAL VADIAPPELR GAAFGLRQSL DTVGAFVGPL LAVGLMLLWA DDFRAVFWVA
VIPGLLAVAV LVFGVHEPDR PAHAVRRNPI SRANLRRLGG AYWWVVAVGG LFTLARFSEA
FLVLRAQQGG MALALIPLVM VAMNIVYSLS AYPFGKLSDR VSHTKLLAIG LLVLIAADLV
LASSSHWAVV LAGVALWGIH LGMTQGLLAT MVADTAPADL RGTAFGFFNL ISGLAMLLAS
VCAGWLWDIY GAAFTFYAGA VFCLLTLFLL KIRPEHQSRL SGTKAG
|
|---|
| |