| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0505 |
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| Symbol | |
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| ID | 3569979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 564854 |
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| End bp | 567712 |
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| Gene Length | 2859 bp |
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| Protein Length | 952 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637678947 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_283732 |
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| Protein GI | 71906145 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.337439 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTCCTG TGATGGAGCG CGGCGAAACG GGGGTCTCGC CGCAACTTTG GTGTGTCATT
CTTACGCTGG GCCTGGCCTT GGGCTGGGCG TTGCCGTCGG TTCGTTTCTT TTCAACGCCC
GCGCAATATC TTCCCGTTCA TACCGCGCTG GAATTCGTCG CCATGGCGGT TGCATGCATG
GTGTTCGCGC TGGCCTGGAA TCTCCGCAGG CAGCCAGGCA ACAGTGACAA GATTCTGCTT
GGCGCCGGAT TCCTGGCGGT ATGCCTGATT GACTTCGGGC ATACCCTTTC CTATGCCGGA
ATGCCGGATC TGCTAACGCC TAGCGGACCG GAAAAGGCGA TCAATTTCTG GCTGGCCGGG
CGTTATGTTG CCGCAGCGGC ACTCTTGGGC ATTGCCGTGC TGCCAAAGCG CGACTTGTCG
GCTTGTGCCG GCAATTGTCT GGTCGCCGGG GTTGTCGTCG TTGCCGCTTG CGCCTGGTGG
CTTGGGTTGA TGCATCCGCA GTGGTTTCCC CGGACCTTTG TGCCGGGCGA GGGGCTGACC
CCCTTCAAGA TCGGCGCGGA GTACCTGCTG GCTGCACTCT ATGCACTCGC TGCCTGGGGG
CTGCTCGTCA AGGCGAAGCG AACGGACAAT GCCAATCTCC ATTGGCTGGC TGCCGCCGCC
TGGGTACAAG GGCTCGCCGA GATGTTCTTC ACGCTTTATG GCGAGGTGAC CGATCTATTC
AATCTGCTCG GTCATGTCTA CAAGGCTGTT GCCTACCTGA TGGTTTATCG GGCGATGTTC
GACGCTGGAG TGCTGGCCCC TTTCCGTGAA ATGAAGTTGG AGCGTTCGCG TCTGCAGGCC
CTGCTGTCAG CGATTCCCGA CCCGGTCTTC GTCAAGAATG CGAATGGCGT TTTCATGTCC
TGTAACAAGG CATTCGAGCG TTTACTCGGG GCGCCGGAAA AGAGCATCCT GGGCAAGACA
GACTACGATT TTTTCGACAA GGACCTAGCC GACTTCTTTC GCGAGAAAGA TCGCGCCGCG
ACGGCAGCCG GACGCCCTTT GAGCAACGAA GAGTGGCTCG AGTTTGCCGC AGATGGCTAT
AGCGGACTTT TTGAAACGAC GAAGACCCCG CTTTATCTGG ATGGGCAGGC AATCGGGACG
CTGGGTATTG CCCATGACAT TACCCGGCGC AAGCGGATCG AGGCCGACCT GCGCCTCGCA
GCAGCCGCCT TCGAGTCCCA GACAGCAATG TTGGTAACCG ATGCGAATGG TGTCATCCTG
CGGGTCAACC AGGCCTTCCT CAGAGACACC GGTTATGCCG TCGAGGAGTG CGTTGGCCAG
ACGCCGCGCA TCCTCCGTTC AGGCAGACAC GATCCGGCGT TCTATCAAAA AATGTGGGAA
AGCATCCGGA GTTCAGGGGT CTGGCAGGGC GAGATATGGG ATCGTCGCAA AGACGGTTCG
ATATATCCGA AGTGGCTGAC AATCTCCGCG GTGCTTGGCG ACTCCGGTGA GGTCACCCAT
TACATTGGCT TGCATCAGGA CGTCTCCGAA CGCAAGCTGG CCGAAAGTCG AATTCATCAA
CTGGCCTATT ATGATCAGGT AACAGGTCTG CCCAACCGCA TCCTGCTGCA GGAGCGACTG
AGTCAGGTGA TGGCGAAATG CCGCGCCAGC AGTAACTATG GCGTCTTGTT GTTCGTCGAT
CTCGATAACT TCAAGACACT CAACGATACC CTTGGCCACA ATGTCGGGGA TCTTTTGCTG
AAGCAGGTTG GCGAAGTCCT GCGCCGATGC TCGCGTGAGA GTGACACCGT CGCCCGCCTG
GGGGGCGACG AATTTGCGGT GATTATGTCT GAGTTGGGAA CTGATCCAAG CGCAGCCATG
CAGGGCGCCG AAGCGGCGGC ACGTTATCTG CTGTCCGAAC TGGGGCGAAC ATTCCAGTTA
GGGAACGTTA TTCATCGCAA CACGGTGAGT ATCGGGGCCA CACTGTTCAA GGGCGAGCAG
GAGAGCATCG AGTCCCTTAT GCGGCAGATC GATCTCGCCA TTTATCAGGC CAAGGGGGCG
GGGCGGAATA CCGTTCGTTT CTTTGATCCG AGCATGGAAA TTGCACTCAG GGAACGGGCG
GCCATTGAAG AGGCGTTGCG ATACGCCATT GAGGAAGAGC AGTTCCTGCT GCACTATCAG
GCCCAGATCG GTGAGGATGG AAGAATAGAA GGGGCGGAAG TGCTTTTGCG CTGGCAGCAC
CCTGAGCGTG GCATGGTGTC TCCTGCTATT TTTATTCCTC TGGCCGAGGA AACCGGGGAT
ATCGTGCTGC TCGGCAGTTG GGTGCTGAAG CAGGCGGCAG CGCAATTGGC CCGCTGGGCT
GAATCACCGG TGATGGCGGG CTTGGTCCTG GCTGTAAACG TCAGTGCCGT TCAGTTGCGT
CAGCCGGATT TCGTCGAACA GGTGACGACA GTATTACGCG AGGCTGGTGC CGACCCCGGC
CGCCTGAAAC TGGAGCTGAC TGAAAGCATG CTGGTCAATG ATGTCGAGGC GACAATCGCC
AAAATGCAGT CATTGAAGGC AATTGGCATC GGATTTTCGC TGGATGATTT CGGTACTGGA
TACTCGTCGC TTTCCTACCT CAAGCGCCTG CCGCTTAGTC AGCTCAAGAT CGATCAGTCT
TTCGTTCGTG ACGTGCTGGT CGACGCCAAT GATGTGGCGA TTGCCAGTTC CGTTGTCGCC
CTGGCCAAGA GCCTCGGACT GGGCGTGATC GCAGAAGGTG TGGAGACCGA GGCGCAGCGC
GAACTGCTGG CGGGTATTGG GTGTCACTGC TATCAGGGCT ATCTTTTTAG TCGGCCGCTG
CCAATTGGCG ACTTTGAGCG CCTTGTTTCG GGTGCGTGA
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| Protein sequence | MSPVMERGET GVSPQLWCVI LTLGLALGWA LPSVRFFSTP AQYLPVHTAL EFVAMAVACM
VFALAWNLRR QPGNSDKILL GAGFLAVCLI DFGHTLSYAG MPDLLTPSGP EKAINFWLAG
RYVAAAALLG IAVLPKRDLS ACAGNCLVAG VVVVAACAWW LGLMHPQWFP RTFVPGEGLT
PFKIGAEYLL AALYALAAWG LLVKAKRTDN ANLHWLAAAA WVQGLAEMFF TLYGEVTDLF
NLLGHVYKAV AYLMVYRAMF DAGVLAPFRE MKLERSRLQA LLSAIPDPVF VKNANGVFMS
CNKAFERLLG APEKSILGKT DYDFFDKDLA DFFREKDRAA TAAGRPLSNE EWLEFAADGY
SGLFETTKTP LYLDGQAIGT LGIAHDITRR KRIEADLRLA AAAFESQTAM LVTDANGVIL
RVNQAFLRDT GYAVEECVGQ TPRILRSGRH DPAFYQKMWE SIRSSGVWQG EIWDRRKDGS
IYPKWLTISA VLGDSGEVTH YIGLHQDVSE RKLAESRIHQ LAYYDQVTGL PNRILLQERL
SQVMAKCRAS SNYGVLLFVD LDNFKTLNDT LGHNVGDLLL KQVGEVLRRC SRESDTVARL
GGDEFAVIMS ELGTDPSAAM QGAEAAARYL LSELGRTFQL GNVIHRNTVS IGATLFKGEQ
ESIESLMRQI DLAIYQAKGA GRNTVRFFDP SMEIALRERA AIEEALRYAI EEEQFLLHYQ
AQIGEDGRIE GAEVLLRWQH PERGMVSPAI FIPLAEETGD IVLLGSWVLK QAAAQLARWA
ESPVMAGLVL AVNVSAVQLR QPDFVEQVTT VLREAGADPG RLKLELTESM LVNDVEATIA
KMQSLKAIGI GFSLDDFGTG YSSLSYLKRL PLSQLKIDQS FVRDVLVDAN DVAIASSVVA
LAKSLGLGVI AEGVETEAQR ELLAGIGCHC YQGYLFSRPL PIGDFERLVS GA
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