Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0424 |
Symbol | |
ID | 3567670 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | + |
Start bp | 466019 |
End bp | 468166 |
Gene Length | 2148 bp |
Protein Length | 715 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637678864 |
Product | PAS:GGDEF |
Protein accession | YP_283651 |
Protein GI | 71906064 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000000207007 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00445241 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATGATG TCGTCAACCA GCCTTCCAAA ACCGGGAGCG ATTCGCTTCT AGTCCTGGGC TACCAGGTCT GGCTGGCCGT GGCCTATCTT CTGGTAGCCC TGCTGTGCTG GCTTGGCGTG TCAATGGAAT TCAGCCAGAT CGATGAGAAC ATCGAAACCC TCGCCCGTGA GCGGGGAGCC GCGCTTTTTC GGTTGGTTGA GCTGACCCGT GACTGGAATG CCAAGCATGG CGGCGTCTAT GTTCGGGTGA CCGAGGCGAC ACAACCGAAT CCCTATCTGA AGCATCCGAA GCGCGATCTT CAGACAACGG ATGGCTTGCA ATTGACCATG GTCAATCCGG CCTTCATGAC TCGCCAGATT GCCGAGATTG CGGAGCAGGC CGATGGCGTT CAATTCCACA TCACCAGCCT GAAACCGATT CGTCCGGCCA ATACGCCGGA CGCCTGGGAG GTCGATGCCC TGGAGACCTT TGAGGGCGGC AAGCGTGAAG TTCTATCGCT GGTGCAGAGT GAAAAAGGGG CTATGCATCG CTATATGGCC CCCTTGTTCG TCAAGCAGCC CTGTTTGAAT TGCCATTCTG AACAGGGCTA TCGGCTTGGT GAGATCCGGG GCGGCATCAG CGTGTCGATG CCAGCTGAAA AAATCCTCTC GGTTCGTCGC GATCAGCGGC GCCGAATAAT GCTGGTCTTC GGTGCCGGGG CATTGATGTT TGCGCTACTG ATGCATTTCG TGATCAGGCG CTCACGCCAG CATTTTCTGC ACCTGAAAGC GGTCACGGCC GGGCAGGAAA AGTTGATTGC CGAGCGGACC CAGGCGCTTT CCTCTGCCAA CGAGCAATTG ATTGGGGAGG TGGCTGAGCG CAAGCGGAAG GAAATCCAGA TTTCAGAAAG CGAAGCACGC TATCGCTCGG TCATCGAAAC CAGTCAAAAC GCCATTCTGA TCATGCAGGC GCCGAATTTT GTCATTGTGT TTGCCAATGA GCAGGGGGCT GCTCTGGTGG GGCTTGCACC CAGTCAAATG ATTGATCGGC CGATCCTTGA TTTTGTTTGC CAGCAGGATC GCAGCATGGT GGCCGAGCGG CTGGCCCGTC GCGCACGCGG CGAACCTGTT TCGCCCACGG TACGTGCCCA TTTTTGCCGT TTGGACGGTT CCCAGGTCCG GGTCGGCGAT GTCCACGTGG CGCGCATCGA GAGTGCTTCG GAGTATCCAC AATGGGTGCT CAGTGTGCAT GATGTGACCA ACCGCCTGGC AAACGAACGG GCGCTGCAGA TTTCGGCGGC CGTTATGGAG AATGCCGCCG AAGGCATTGT GGTGACCGAT GCCCAGAATC GGATCATTCA GGTCAATCCT GCTTTTTCGG CCATTACGGG CTACCGGCCA CAGGAAGTAT TGGGCAAGGA TCCCAGTCTC CTTGGTTCGG GTCGGCATGA GAGCGGCTTT TTCCGCGAAA TGTGGGAAAC CCTGGAAAAA GAGGGGCACT GGGCCGGGGA GATCTGGAAT CGTCGTCCGG ACGGGACAGT CTACGTCGTC TGGCTGGCAA TTTCGGCGAT TCGTGGCGAG GGTGTAGAGA GTGGTGGCCG CCATGTGGCG ACCTTCATCG ATATCACCCA GCGCAAGGAG GTCGAGGAAC TGCTCCGCCA TCGGGCGCAA AGCGATCCCC TGACCGATTT GCCGAACCGC ACCCTGTTCT ATGACCGCTT GCAGGTGGCG CTGACCCACG CCCGACGCTA TAGCGAGGAA TTTGCCTTGC TTTACATCGA CCTCGATCAT TTCAAGATCG TGAACGACAC GCTTGGCCAT GCCGCTGGTG ACGAGTTACT GATTGAGGCC AGCCATCGGC TGACGCAGGC CGTACGCCAG TCGGATACGG TGGCCCGCCT GGGGGGGGAC GAGTTCGCCG TCATTCTGCC CAAGACTGGC AGTCAGTCCG AGATTGAAGA AGTGGCGCAG CGCGTCGTCG AGACGATGGT TCGACCGTTT CTCCTGTCGG CCGGCACGAT CAATATTTCG ACCAGCGTCG GGGTGGCCAT TTATCCGCGC CACGGCGAAG ATCTGGAAGC GATCCGGGCC AGCGCCGATG CGGCTCTCTA TTCAGTCAAG CAATCCGGAC GTAACGGCTA TCGCTTGTAC GTGCCGCCTG GCCACTAA
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Protein sequence | MNDVVNQPSK TGSDSLLVLG YQVWLAVAYL LVALLCWLGV SMEFSQIDEN IETLARERGA ALFRLVELTR DWNAKHGGVY VRVTEATQPN PYLKHPKRDL QTTDGLQLTM VNPAFMTRQI AEIAEQADGV QFHITSLKPI RPANTPDAWE VDALETFEGG KREVLSLVQS EKGAMHRYMA PLFVKQPCLN CHSEQGYRLG EIRGGISVSM PAEKILSVRR DQRRRIMLVF GAGALMFALL MHFVIRRSRQ HFLHLKAVTA GQEKLIAERT QALSSANEQL IGEVAERKRK EIQISESEAR YRSVIETSQN AILIMQAPNF VIVFANEQGA ALVGLAPSQM IDRPILDFVC QQDRSMVAER LARRARGEPV SPTVRAHFCR LDGSQVRVGD VHVARIESAS EYPQWVLSVH DVTNRLANER ALQISAAVME NAAEGIVVTD AQNRIIQVNP AFSAITGYRP QEVLGKDPSL LGSGRHESGF FREMWETLEK EGHWAGEIWN RRPDGTVYVV WLAISAIRGE GVESGGRHVA TFIDITQRKE VEELLRHRAQ SDPLTDLPNR TLFYDRLQVA LTHARRYSEE FALLYIDLDH FKIVNDTLGH AAGDELLIEA SHRLTQAVRQ SDTVARLGGD EFAVILPKTG SQSEIEEVAQ RVVETMVRPF LLSAGTINIS TSVGVAIYPR HGEDLEAIRA SADAALYSVK QSGRNGYRLY VPPGH
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