| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0313 |
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| Symbol | |
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| ID | 3569767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 356857 |
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| End bp | 361068 |
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| Gene Length | 4212 bp |
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| Protein Length | 1403 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637678755 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_283542 |
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| Protein GI | 71905955 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000267546 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00189389 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCAT TGCTCGATCT ATTCAAGCAG GTAACCGCCG AGGAAGAATT CGACGCGATT
ACCATTGGCC TCGCTTCGCC CGACAAGATC CGTTCCTGGT CCTATGGTGA AGTCAAGAAG
CCGGAAACCA TCAACTACCG CACCTTCAAG CCGGAGCGTG ATGGCCTGTT CTGTGCCAAA
ATCTTTGGTC CGATCAAGGA TTACGAATGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAT
CGTGGCGTGA TCTGCGAGAA GTGCGGCGTT GAAGTGACGC TGGCCAAGGT TCGTCGCGAC
CGCATGGGTC ACATCGAACT GGCCTCGCCG ACCGCCCACA TCTGGTTCCT GAAGTCGCTG
CCGTCCCGTC TCGGCATGGT GCTCGACATG ACGCTGCGCG ATATCGAACG CGTCCTGTAC
TTCGAAGCAT ACGTCGTGAC CGATCCGGGC ATGGTCAGCA ACCTTCAGCG CGCTCAGTTG
CTGACGGAAG ACCAGTATCT GGAAATGGTC GAAGAGCACG GTGATGAATT CCAGGCCCTG
ATGGGCGCTG AAGGTATTCG CGAACTGTTG CGCAACCTCG AACTGGATAG CGAAGTCGAG
TCTCTGCACG CTGAACTCGA AGTGACCGGT TCTGAAGCCA AGAACAAGAA GCTGGCCAAG
CGTCTGAAGA TCCTTGAGGG GTTCCAGAAG TCGGGCATCA AGCCGGACTG GATGATCCTC
GAAGTTCTGC CGGTTCTGCC GCCGGACCTG CGTCCGCTGG TTCCGCTGGA TGGCGGCCGC
TTTGCGACCT CCGACCTGAA CGATCTTTAT CGTCGTGTCA TCAACCGGAA CAATCGCTTG
AAGCGCTTGC TCGAGTTGAA GGCTCCGGAA ATCATCGTCC GTAACGAAAA GCGCATGCTG
CAGGAGTCGG TCGATTCCCT GCTTGACAAC GGCCGTCGCG GCAAGGCGAT GACCGGTGCC
AACAAGCGTC CGCTGAAGTC GCTGGCTGAC ATGATCAAGG GCAAGGGCGG TCGTTTCCGT
CAAAACTTGC TGGGTAAGCG CGTCGACTAC TCCGGCCGTT CGGTCATCGT GGTTGGTCCG
CAGCTCAAGC TGCATCAGTG CGGCCTGCCC AAGCTGATGG CCCTGGAGCT GTTCAAGCCC
TTCATCTTCC ACAAGCTGGA AGTGCTCGGC TACGCCACCA CCATCAAGCA AGCCAAGAAG
ATGGTCGAAG GTCAGGAACC GGTGGTGTGG GACATCCTTG AAGATGTCAT CCGCGAACAT
CCGGTCATGC TGAACCGTGC GCCGACCCTG CACCGTCTGG GTATCCAGGC GTTCGAACCG
ACCCTGATCG AAGGCAAGGC CATCCAGCTG CACCCGCTCG TTTGCGCGGC GTTCAACGCC
GACTTCGACG GTGACCAGAT GGCTGTTCAC GTCCCGCTGT CGCTCGAAGC GCAGATGGAA
GCCCGCACCC TGATGCTGGC CTCCAATAAC GTGCTGTCGC CGGCTAACGG CCAGCCGATC
ATCGTGCCGT CGCAGGATAT CGTGTTGGGT CTGTACTATG CGACCCGCGA GAAGATCAAC
GGCAAGGGTG AAGGCATGTA CTTTGCCGAT ACTGCCGAAA TCGAACGCGC CATGGCTGCT
GGTCAGCTGG ATGTGCACTC CCGTATTTCG GTCCGCCTGA AGCAGTACGA ACCGGCGGCC
GTCGATGGCG AATGGGAAGA GAAGACCGTT CGTGTCGAAA CCACGGCCGG TCGTGCGCTG
CTCGCCAAGA TTCTGCCGAA GGGTCTGCCC TTCAAGGCAA TTGATCGTGC CCTGAAGAAG
AAGGAAATCT CCAAGCTGAT CGACGAGTCC TTCCGCCGTT GCGGTCTGAA GGAAACAGTC
ATCTTCGCTG ACAAACTGAT GCAGAACGGC TACGCGCTCG CAACGCGGGC CGGTATTTCT
TTCTGCTCGG ACGACATGCT GGTGCCGGCC AAGAAGTACG AAATCATTTC CTCAGCCGAA
GCCGAGGTCA AGGAAATCGA GACGCAATAC ACGAACGGTC TGGTTACCCA GGGCGAGCGT
TACAACAAGG TCGTTGATAT CTGGGGCCGC ACCGGTGACC AGGTTGCCAA GGTGATGATG
GAAGAACTCG GCCACGAGGA AGTCATCGAC CGCCACGGCA AGAAGGTCAA GCAGGACTCC
TTCAACTCCA TCTACATGAT GGCTGACTCA GGTGCTCGCG GTTCCGCCGC ACAGATTCGT
CAGCTGGCTG GTATGCGCGG TCTGATGGCC AAGCCGGACG GCTCGATTAT CGAGACCCCG
ATTACCACCA ACTTCCGCGA AGGCCTGAAC GTTCTCCAGT ACTTCATCTC GACCCACGGC
GCCCGTAAGG GTCTGGCCGA TACCGCGCTG AAGACCGCAA ACTCCGGTTA CCTGACCCGT
CGTCTGGTCG ATGTGACCCA GGATCTGGTG ATCACCGAAG ATGACTGCGG CACCAAGAAC
GGCTTCGTTG TAAAGGCGCT GGTCGAAGGC GGTGAAGTGA TCGAAGCACT GCGCGAACGT
ATTCTGGGTC GTGTCACCGT TGATGACTTG ATCGATCCGG AAACCCAGGA AACGGTCATC
TTCGCTGGCA CGATGCTGGA TGAAGACCTG GTTGATTTGA TCGACAAGCT GGGTATCGAT
GAAGTCAAAG TCCGCACGCC GCTGACCTGT GACACGCGCT ATGGCCTGTG CGCCCAGTGT
TATGGCCGTG ATCTTGGCCG TGGCACGATG GTCAACGCCG GTGAGGCAGT CGGCGTGATC
GCTGCCCAGT CGATTGGCGA GCCGGGTACT CAGCTTACCA TGCGTACCTT CCACGTCGGT
GGTGCGGCTT CCCGTGCTGC CGTGGCTGAC AAGGTCGAAG GCAAGTCGGC TGGTACCGTG
CGCTATACCT CGAACATGCG TTATGTCACC AGCGCCAAGG GCGAAAAGGT TGTCATTTCC
CGTTCTGGCG AAGTGCTTAT CGTCGACGAT CATGGTCGTG AGCGCGAACG TCACAAGGTG
CCGTACGGCG CCATGCTGTC GGTCGATGAA GATAAATCAG TCAAGGCAGG TGCCAAGCTG
GCAACCTGGG ATCCGCATAC CCGTCCGATC ATTACCGAAT ACGCGGGTAC CGTTCGCTTC
GAGAATGTCG AGGAAGGCGT TACCGTCGCC AAGCAGGTCG ATGATGTGAC TGGCTTGTCC
ACGCTGGTAG TTATCGACCA CAAGCGCGGT GGCAAGGCTG CGGTCAAGGG TGTTCGCCCG
GTGGTCAAGC TCCTTGATGA GAGCGGGCAG GAAGTACGCG TGCACGGCAG TGATCACACT
GTTTCGATCG CCTTCCAGGT TGGCTCGATT ATTTCTGTGG TCGATGGTCA GCAGGTTGGT
GTGGGCGATG TGCTGGCCCG TATGCCGCAA GAGTCTGCCA AGACTCGCGA CATTACCGGC
GGTCTGCCGC GCGTTGCCGA ACTGTTCGAA GCTCGTACGC CGAAGGATGC ATCCGTGCTG
GCTGAAGTCA CTGGCACGAT CAGCTTTGGT AAGGACACCA AGGGCAAGCA GCGCCTGGTT
ATCACCGATC TCGAAGGCAA CGTTCACGAG TTCCTGATTT CCAAGGACAA GCATGTTCTG
GTGCACGATG GCCAGGTGGT TAACAAGGGC GAAAAGATCG TCGAAGGCGA ACCGGATCCG
CACGATATTC TGCGTCTGCA GGGTATCGAA GCTCTGGCCC GCTACATTAC CGACGAAGTC
CAGGACGTTT ACCGCTTGCA GGGCGTGAAG ATCAACGACA AGCACATTGA AGTGATCGTC
CGTCAGATGC TGCGTCGGGT GACCATTGTT GAACCGGGCG ACACCAAGTT CATCAAGTCC
GAGCAGGTCG AACGCGCTGA ACTGCTGGCT GAGAATGATC GTGCCAATGC CGAAGGGAAG
ATCCCGGCAA CAATCGAACA CATGTTGCTC GGTATTACCA AGGCATCCTT GTCGACCGAT
TCGTTCATCT CTGCTGCATC CTTCCAGGAA ACCACTCGCG TACTCACCGA GGCTGCCATC
ATGGGCAAGC GCGATGAATT GCGTGGTCTC AAGGAAAATG TCATCGTCGG TCGTCTCATT
CCGGCGGGTA CCGGTCTGGC CTTCCATCGG AGCCGCAAGG CTCAGCTGGC AGGTGAAGAT
ATCGCGGCCT CCCGTCAGAT CGAAGAGGCA ACTGCCGAAA ACACAACACA GGAAGCCGAT
CAGGGCCTGT GA
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| Protein sequence | MKALLDLFKQ VTAEEEFDAI TIGLASPDKI RSWSYGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRD RMGHIELASP TAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAYVVTDPG MVSNLQRAQL LTEDQYLEMV EEHGDEFQAL
MGAEGIRELL RNLELDSEVE SLHAELEVTG SEAKNKKLAK RLKILEGFQK SGIKPDWMIL
EVLPVLPPDL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLLELKAPE IIVRNEKRML
QESVDSLLDN GRRGKAMTGA NKRPLKSLAD MIKGKGGRFR QNLLGKRVDY SGRSVIVVGP
QLKLHQCGLP KLMALELFKP FIFHKLEVLG YATTIKQAKK MVEGQEPVVW DILEDVIREH
PVMLNRAPTL HRLGIQAFEP TLIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLSLEAQME
ARTLMLASNN VLSPANGQPI IVPSQDIVLG LYYATREKIN GKGEGMYFAD TAEIERAMAA
GQLDVHSRIS VRLKQYEPAA VDGEWEEKTV RVETTAGRAL LAKILPKGLP FKAIDRALKK
KEISKLIDES FRRCGLKETV IFADKLMQNG YALATRAGIS FCSDDMLVPA KKYEIISSAE
AEVKEIETQY TNGLVTQGER YNKVVDIWGR TGDQVAKVMM EELGHEEVID RHGKKVKQDS
FNSIYMMADS GARGSAAQIR QLAGMRGLMA KPDGSIIETP ITTNFREGLN VLQYFISTHG
ARKGLADTAL KTANSGYLTR RLVDVTQDLV ITEDDCGTKN GFVVKALVEG GEVIEALRER
ILGRVTVDDL IDPETQETVI FAGTMLDEDL VDLIDKLGID EVKVRTPLTC DTRYGLCAQC
YGRDLGRGTM VNAGEAVGVI AAQSIGEPGT QLTMRTFHVG GAASRAAVAD KVEGKSAGTV
RYTSNMRYVT SAKGEKVVIS RSGEVLIVDD HGRERERHKV PYGAMLSVDE DKSVKAGAKL
ATWDPHTRPI ITEYAGTVRF ENVEEGVTVA KQVDDVTGLS TLVVIDHKRG GKAAVKGVRP
VVKLLDESGQ EVRVHGSDHT VSIAFQVGSI ISVVDGQQVG VGDVLARMPQ ESAKTRDITG
GLPRVAELFE ARTPKDASVL AEVTGTISFG KDTKGKQRLV ITDLEGNVHE FLISKDKHVL
VHDGQVVNKG EKIVEGEPDP HDILRLQGIE ALARYITDEV QDVYRLQGVK INDKHIEVIV
RQMLRRVTIV EPGDTKFIKS EQVERAELLA ENDRANAEGK IPATIEHMLL GITKASLSTD
SFISAASFQE TTRVLTEAAI MGKRDELRGL KENVIVGRLI PAGTGLAFHR SRKAQLAGED
IAASRQIEEA TAENTTQEAD QGL
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