| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0294 |
|---|
| Symbol | |
|---|
| ID | 3570180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 335325 |
|---|
| End bp | 336587 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637678732 |
|---|
| Product | Outer membrane efflux protein |
|---|
| Protein accession | YP_283523 |
|---|
| Protein GI | 71905936 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.757224 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTTG CTAACTCAAT GTTCATGATG CAACGCACAA ACCTGTTGAT TCTCCTGTTG
GGCATGAGTG CGACGCTGGC CGTCGCGCAG CCCGAATACG ATCTGCCGAA GCTGGAAGCG
CTGGCCATGG AGTCCAGCCG CTCCGTACTG GCGGCGCGGG AGCAGATCAC GGCTGCCCGC
CATGCCGTCG AAAGTGCGGG TGCCTTTCCC AATCCGGAAC TGGAATACCT CGGTGGCACT
GCGCGTTCTC GCGGCGTGGG GGGCAATCTT GGCGATGCAC GCAGCGTCGC GCTGACTCAG
CCGTTGGATA TGCCGTGGCG CCGAGCTGCC CGGATCGGTG CGGCGGAGGC GGGATTGGCG
GCGACCAGTG CGGCGGTGCG CGCTTTCGAA GCGGACTCGC TGGCCCGTCT TCGCCTGCGC
TATTTCGAAG TTCTACGTCG CGATGCCGAG TTGAAAAATG CCCGCGAAGA CATGAGCTTG
ATGGAGAGTG TGCGCTCACG TATCGCACTT CGGGTCGAAA CCGGTGAAGC GCCGCGTTTC
GAGTTGATCA AGGCCGATGC CGAAGCGCTC AACGCGCAGA AGAGCGCTCA GGCCGCCGGA
TTCAGGGTCG AACAGGCGCG TTCGTTGCTG CGCCAGGCGG TTGGTGGTGC GCTGCCGCCT
GAGTTCGGTT TGCAGGGCCG ATTACGTGAT GTACCGGAGC TGCCGCCGCT GGATGGGCTG
CGCAAACAAC TGGGTGAAAC GAGCCCGGAT TTGGCGCGGG CCCGCGCCGA AATGGTGCGC
GCCCAGCATC AGCTTGATCT GGAAAAACGG CAACGCTGGC CGAGCATCGC CTTGAAAGCC
AGCATGGATG AGGATCCTGA GACGCGGGCT TCGAAAGTCG GCGTGGTGGT CTCGATACCC
TTGTGGGACC GGCGTAGCGG CCCCATCGGC GAGGCGGCGG CGCAATTGTC GCGGACGCGC
CACGAATTCG CGGCGCAGGA GTTTTCGCTG GCCCAGCAGC TGGACGTTGC TGTCCAGCAG
TATGAAATCG CCCAGTCGCA GGTGACGGCG CTGGAAGGCG GCATCGTCAG GCAAGCCGAA
GCTGCACTGA AGGTCTCCGA GGCGGCTTAT CGCTTTGGCG AACGCGGCTT CCTCGAAGTG
CTCGATGCGC AACGGGTATT CCGTGCGGCT CGCGCCGAGT TGATTGCAGC GCGCTACGAA
TTGGCGGCGG CGTGGGTGGA AATTGAAAGA TTGCGGGCGA TTCCCGGAGA AACAAGACAA
TGA
|
|---|
| Protein sequence | MRFANSMFMM QRTNLLILLL GMSATLAVAQ PEYDLPKLEA LAMESSRSVL AAREQITAAR
HAVESAGAFP NPELEYLGGT ARSRGVGGNL GDARSVALTQ PLDMPWRRAA RIGAAEAGLA
ATSAAVRAFE ADSLARLRLR YFEVLRRDAE LKNAREDMSL MESVRSRIAL RVETGEAPRF
ELIKADAEAL NAQKSAQAAG FRVEQARSLL RQAVGGALPP EFGLQGRLRD VPELPPLDGL
RKQLGETSPD LARARAEMVR AQHQLDLEKR QRWPSIALKA SMDEDPETRA SKVGVVVSIP
LWDRRSGPIG EAAAQLSRTR HEFAAQEFSL AQQLDVAVQQ YEIAQSQVTA LEGGIVRQAE
AALKVSEAAY RFGERGFLEV LDAQRVFRAA RAELIAARYE LAAAWVEIER LRAIPGETRQ
|
|---|
| |