Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_0020 |
Symbol | |
ID | 3570044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 25900 |
End bp | 26931 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637678449 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_283249 |
Protein GI | 71905662 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 53 |
Plasmid unclonability p-value | 0.732804 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.419154 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTCGCA TTATATCCGC GCTCATCCTG GCCGTGACGG CCGTCTGCGC ATCGGCCGCC GAGCCGCTAC AACTCGTCGA CAATCCGCCT GATCGTCATA TCGTCGTCAA GGGCGACACG TTGTGGGGCA TTTCCGGCAA ATTCCTCAAG CAGCCGTGGC GCTGGCCGGA AATCTGGCAG ATGAACAAGG AACAGATCAA GAACCCGCAC TGGATTTATC CGGGCGACGT CATCATGCTC GATATGTCGA GCGGTACCCC GCGCCTGAAG ATTGGCAAAC CCGTCACCGG GCAAAGCGGC AAGGTTCAGC CGACCGTCTA TAGCACCCCG GTGCAGCAGG TCATTCCGAG CATCCCCCCC AATGCCATTG AACCGTTCCT CTCCAAGCCA CTGATTATCG AGACAACGGA TCAGAACGCG ACAGTCAGCA TCGTCGCAAC CCAGGAAGAT CGCATGCTGG TCGGTACGGG TGATTCTTTC TACGCCCAAG GCATTCCCGA TTCAAGCATC GAAAAATGGA ATGTATTCCG CAAGGGCAAG CCGCTGAAAG ATCCGGATAC CGGCGAGACT ATTGCTTACG AAGCCGTTTT CCTCGGCAAT GCCCGCTTGG TCAAGCCAGG CGAACCGGCA ACGCTGCGCG TCACCCTGGC CAAAGAAGAA ATGAATCGCG GCGACAATCT TTTGCCCGCT CCTCCCCCGG AAATTCTGAC CTACGTACCG CACCGCCCTG AGCAGGAAGT CTCAGCCAAA GTGCTTGGTA TTTATGGCGG GGTGCAAGAG GGTGGCGCCA ATTCGGTCAT TTCCATCAGC CGTGGCAAGA ATAGCGGTCT CGAACTGGGA CATGTCGTTG CGCTCTACCG GAATCGTGTT TCGGTCAGCA TTGATGAAGA CGGCCGTCGC ACTTCAACTC CGGTACCTGA AGAACGTTAT GGCCTTGCCT TCGTTTTCCG CGTCTTTGAC CGCGTCGCCT ACGCCTTGGT CGTCGAGTCC TCCAAGGCAG TCATCATCGG GGACTCCGCA CTGAACCCGT GA
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Protein sequence | MVRIISALIL AVTAVCASAA EPLQLVDNPP DRHIVVKGDT LWGISGKFLK QPWRWPEIWQ MNKEQIKNPH WIYPGDVIML DMSSGTPRLK IGKPVTGQSG KVQPTVYSTP VQQVIPSIPP NAIEPFLSKP LIIETTDQNA TVSIVATQED RMLVGTGDSF YAQGIPDSSI EKWNVFRKGK PLKDPDTGET IAYEAVFLGN ARLVKPGEPA TLRVTLAKEE MNRGDNLLPA PPPEILTYVP HRPEQEVSAK VLGIYGGVQE GGANSVISIS RGKNSGLELG HVVALYRNRV SVSIDEDGRR TSTPVPEERY GLAFVFRVFD RVAYALVVES SKAVIIGDSA LNP
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