Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_6055 |
Symbol | trmE |
ID | 5751683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 6762896 |
End bp | 6764317 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641301197 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_001567068 |
Protein GI | 160901486 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCCCC GCCACAACGA CCCCATCGCC GCCATCGCCA CCGCCCCGGG GCGGGGTGCC GTGGGCATCG TGCGTGTGTC CGGCAAGGGC GTGGCGCCGC TGGTGCGGGC GCTGTGCGGG CGCGACCTCA AGCCGCGCGA GGCCACCTAT CTGCCGTTTC GCGATGCCCA GGGCGGCCCC ATCGACCACG GCCTGGCCCT GTTCTTCCCG GCGCCGCACA GCTACACCGG CGAGGATGTG CTGGAGTTGC AGGCCCACGG CGGCCCCGTC GTTTTGCAAC TGCTGCTGGC GCGCTGCCTG GAGGCTGCGC AAGACCCGCG CGAAGGCCAT CGCAGCGTGC TGCCGGGCCT GCGCCTGGCC CAGCCCGGTG AATTCACCGA GCGTGCCTTT CTCAACGACA AGATCGACCT GGCCCAGGCC GAGGCCATTG CCGACCTGAT CGACGCCAGC ACCGAGGCCG CCGCGCGCAG TGCGAGCCGT TCGCTGTCGG GCGCTTTTTC CGAGGAAATC CATGGCCTGC GCGACGCGCT GGTGCACCTG CGCATGCTGG TCGAGGCCAC GCTGGACTTT CCCGAGGAAG AGATCGACTT CCTGCAAAAG GCCGATGCCA GCGGCCAGCT CGCGCGGCTG CGCGGCAAGC TGGACCAGGT GCTGTCGCGC GCCCACCAGG GTGCGCTGTT GCGCGAAGGC ATCAAGGTCG TGATCGCGGG CCAGCCCAAT GCGGGCAAGA GCTCGCTGCT CAACGCGCTG GCCGGTGCGG AGCTGGCCAT CGTCACACCG ATTGCCGGCA CCACGCGCGA CAAGGTGCAG CAGACCATCC AGATCGAAGG CGTGCCCCTG CATGTGATCG ACACGGCAGG CCTGCGCGAG AGCAGCGACG AGGTCGAGCG CATCGGCATC GCGCGCGCCT GGGACGAGAT CGCCGCGGCC GATGCCGTGC TCTTCCTGCA CGACCTCACA CGCATGGGCG AGCACGACTA CCTCGCTGCC GATGCCGCCA TTGCCGAAAC CCTGGCCCAG AAGCTGCCGC GCCAGGTGCC CGTCATCGAT GTATGGAACA AGACCGATCG CGCGGAACCC GCCCGGATGC AGGAGCATGG CGGCCGTGAA GGCAGCGTGG CACTGTCGGC ACGCACGGGC GATGGCCTGG ATGCACTGCG CCGGCGCCTG CTGGACGTGG CCGGCTGGCA GTCGGCCCCA GAAGGCCTGT ACCTGGCGCG CGCGCGCCAT GTGGAGGCAC TGCAGGCCGT GGCCGCCCAC CTGCAGGAGG CCGAGCTGCA GCTGGCGGCC CAGGCCGCCC ACCTGGACTT GCTGGCCGAG GAACTGCGCC TGGCCCAGGT CTCGCTGAAC TCCATCACCG GGGAATTCAG CTCCGACGAT CTGCTGGGCG TGATCTTTTC CAGCTTCTGC ATCGGCAAGT GA
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Protein sequence | MLPRHNDPIA AIATAPGRGA VGIVRVSGKG VAPLVRALCG RDLKPREATY LPFRDAQGGP IDHGLALFFP APHSYTGEDV LELQAHGGPV VLQLLLARCL EAAQDPREGH RSVLPGLRLA QPGEFTERAF LNDKIDLAQA EAIADLIDAS TEAAARSASR SLSGAFSEEI HGLRDALVHL RMLVEATLDF PEEEIDFLQK ADASGQLARL RGKLDQVLSR AHQGALLREG IKVVIAGQPN AGKSSLLNAL AGAELAIVTP IAGTTRDKVQ QTIQIEGVPL HVIDTAGLRE SSDEVERIGI ARAWDEIAAA DAVLFLHDLT RMGEHDYLAA DAAIAETLAQ KLPRQVPVID VWNKTDRAEP ARMQEHGGRE GSVALSARTG DGLDALRRRL LDVAGWQSAP EGLYLARARH VEALQAVAAH LQEAELQLAA QAAHLDLLAE ELRLAQVSLN SITGEFSSDD LLGVIFSSFC IGK
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