Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5955 |
Symbol | |
ID | 5751576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 6642379 |
End bp | 6644061 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641301087 |
Product | general substrate transporter |
Protein accession | YP_001566968 |
Protein GI | 160901386 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTATCA ACGCATCGCA AGGCGCGGGG GTCAAGGCGA CCCCGCGGCC CATGACTCCG GAAGAACGCA AGGTGATCTT TGCCTCGTCG CTAGGCACGG TTTTCGAGTG GTACGACTTC TATCTCTACG GATCGCTGGC GGCCATCATC GCCAAGCAAT TCTTCAGCGG GCTCGATGCG GGATCGGCCT TCATCTTCGC GCTGCTGGCC TTCGCGGCCG GCTTCATCGT GCGGCCCTTC GGCGCACTGG TGTTCGGGCG GCTGGGCGAC ATGATCGGGC GCAAGTACAC CTTCCTCGTG ACCATCCTGA TCATGGGCCT GTCGACCTTC ATCGTCGGCA TCCTGCCCAC CTACGCCAGC ATCGGCGTGG CGGCGCCGGT GATCCTCATC GGCCTGCGCA TGCTGCAGGG CCTGGCCCTG GGCGGCGAGT ACGGCGGTGC GGCCACCTAC GTGGCCGAGC ATGCGCCGCA CGGCAAGCGC GGCGCCTACA CCTCGTGGAT ACAGACCACG GCAACGCTGG GCCTGTTCCT GTCGTTGCTG GTGATCCTGG GCGTGCGCAC CTCCATCGGC GAGCAGGCCT TTGCGGACTG GGGCTGGCGC ATCCCCTTCC TGCTGTCCAT CGTGCTGCTG GGTATCTCGG TGTGGATCCG CATGACGCTG TCCGAGTCGC CGGCCTTCCA GAAGATGAAG GCCGAGGGCA AGGTCTCCAA GTCCCCGCTG ACCGAGTCCT TCGGCCAATG GCGCAACCTC AAGATCGTGA TCCTGGCGCT GATCGGCCTG ACCGCCGGCC AGGCCGTGGT CTGGTACACG GGGCAGTTCT ATGCGCTGTT CTTCCTGACG CAGCAGCTCA AGGTCGATGC GGTGACGGCC AACCTCATGA TCGCGGCGGC GCTGATCATC GGCACGCCGT TCTTCGTGAT CTTCGGCTCG CTGTCCGACA AGATAGGCCG CAAGCCCATC ATCATGCTGG GCTGCGTGCT GGCCGTGGTG ACCTACTTCC CCGTGTTCAA GGCGCTGACC GAAGCGGCCA ACCCCGACCT GGCTGCGGCA CAGGCCAAGA ACAAGGTGGT CATCGTCGCC GATCCCAAGG AATGCTCGTT CCAGTTCAAT CCCACGGGCA CCTCCAAGTT CACCAGCTCC TGCGACGTGG CCAAGCAGTT GCTGGCCGCA GGCTCGGTCA GCTATGACTC CGAGGACGCA GCGCCCGGCA AGACGGCCTT CATCCGCATC GGCAGCACCG AGATCCCCTC GTTCTCCATC AAGGGCCTGA GCCCCGAGGA AGCCAAGGCC AAGGACGCCG AGTTCAAGAA GACCGTGGCC AAGGTGCTGG CCGAGGACGG CTATCCCACC AAGGCCGACC CCGCGAAGAT GAACAAGGTC ATGATGGTCG CCATCCTGAC CTACCTGGTC ATCCTCGTGA CCATGGTCTA CGGGCCCATC GCCGCCATGC TGGTGGAGCT GTTCCCCACG CGCATCCGCT ATACCTCCAT GAGCCTGCCG TACCACATCG GCAATGGATG GTTCGGCGGC CTGCTGCCCA CCATGTCCTT CGCCATCGTG GCCCAGACCG GCAATATGTA CAGCGGCCTC TGGTACCCCA TCGTCATTGC AGGCGCCACG GCCATCATCG GCACGCTGTT CCTGCGCGAG ACCAAGGATG TGGATATCTA CGCTAATGAT TGA
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Protein sequence | MAINASQGAG VKATPRPMTP EERKVIFASS LGTVFEWYDF YLYGSLAAII AKQFFSGLDA GSAFIFALLA FAAGFIVRPF GALVFGRLGD MIGRKYTFLV TILIMGLSTF IVGILPTYAS IGVAAPVILI GLRMLQGLAL GGEYGGAATY VAEHAPHGKR GAYTSWIQTT ATLGLFLSLL VILGVRTSIG EQAFADWGWR IPFLLSIVLL GISVWIRMTL SESPAFQKMK AEGKVSKSPL TESFGQWRNL KIVILALIGL TAGQAVVWYT GQFYALFFLT QQLKVDAVTA NLMIAAALII GTPFFVIFGS LSDKIGRKPI IMLGCVLAVV TYFPVFKALT EAANPDLAAA QAKNKVVIVA DPKECSFQFN PTGTSKFTSS CDVAKQLLAA GSVSYDSEDA APGKTAFIRI GSTEIPSFSI KGLSPEEAKA KDAEFKKTVA KVLAEDGYPT KADPAKMNKV MMVAILTYLV ILVTMVYGPI AAMLVELFPT RIRYTSMSLP YHIGNGWFGG LLPTMSFAIV AQTGNMYSGL WYPIVIAGAT AIIGTLFLRE TKDVDIYAND
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